LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
RP11-554A11.4
hsa-miR-345-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000562276
Biotype: sense_overlapping
Gene id: ENSG00000261625
Gene Name: RP11-554A11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-156
0.025
5
6mer
1029-1052
0.003
1
CFLAR-AS1
hsa-miR-345-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_040030.1
Biotype: antisense
Gene id: NR_040030.1 (gene)
Gene Name: CFLAR-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
618-638
0.027
5
RP11-166D19.1
hsa-miR-345-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528986
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
306-325
0.017
1
7mer
1935-1951
0.007
3
6mer
2120-2127
0.003
3
NAALADL2-AS3
hsa-miR-345-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000453180
Biotype: antisense
Gene id: ENSG00000230292
Gene Name: NAALADL2-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-380
0.027
1
XLOC_004428
hsa-miR-345-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009425
Biotype: transcript isomorph
Gene id: XLOC_004428
Gene Name: XLOC_004428
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-38
0.027
1
CTD-2553C6.1
hsa-miR-345-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592332
Biotype: antisense
Gene id: ENSG00000267650
Gene Name: CTD-2553C6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
760-780
0.022
1
8mer
262-286
0.005
0
XLOC_013162
hsa-miR-345-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027115
Biotype: transcript isomorph
Gene id: XLOC_013162
Gene Name: XLOC_013162
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
679-700
0.023
0
6mer
486-507
0.004
Not Conserved
RP11-195C7.1
hsa-miR-345-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456125
Biotype: antisense
Gene id: ENSG00000236021
Gene Name: RP11-195C7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-384
0.027
1
RP11-546O6.4
hsa-miR-345-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000562653
Biotype: lincRNA
Gene id: ENSG00000260677
Gene Name: RP11-546O6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-262
0.027
1
XLOC_005099
hsa-miR-345-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010576
Biotype: transcript isomorph
Gene id: XLOC_005099
Gene Name: XLOC_005099
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1855-1879
0.012
Not Conserved
8mer
683-696
0.010
Not Conserved
6mer
845-864
0.002
Not Conserved
6mer
1189-1204
0.001
Not Conserved
6mer
1436-1451
0.001
0
6mer
1651-1666
0.001
Not Conserved
6mer
1392-1407
0.000
Not Conserved
6mer
1565-1580
0.000
Not Conserved
CH507-396I9.3
hsa-miR-345-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624951
Biotype: lincRNA
Gene id: ENSG00000278961
Gene Name: CH507-396I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-172
0.027
2
XLOC_012694
hsa-miR-345-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026344
Biotype: transcript isomorph
Gene id: XLOC_012694
Gene Name: XLOC_012694
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-156
0.027
0
CTA-796E4.5
hsa-miR-345-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6039-6051
0.005
1
7mer
4898-4903
0.003
0
7mer
8094-8114
0.003
0
7mer
14509-14520
0.003
1
6mer
3038-3050
0.002
3
7mer
16335-16352
0.002
2
6mer
17808-17821
0.002
2
6mer
3820-3844
0.002
1
6mer
28877-28895
0.002
1
6mer
27730-27747
0.001
1
6mer
16313-16339
0.001
1
6mer
7376-7393
0.001
2
6mer
10466-10489
0.001
1
XLOC_003803
hsa-miR-345-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008949
Biotype: transcript isomorph
Gene id: XLOC_003803
Gene Name: XLOC_003803
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-251
0.027
1
XLOC_001726
hsa-miR-345-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003921
Biotype: transcript isomorph
Gene id: XLOC_001726
Gene Name: XLOC_001726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
832-857
0.014
1
7mer
1156-1183
0.007
Not Conserved
6mer
155-182
0.005
1
XLOC_011213
hsa-miR-345-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023356
Biotype: transcript isomorph
Gene id: XLOC_011213
Gene Name: XLOC_011213
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2209-2215
0.023
0
6mer
325-343
0.004
3
RP11-481J2.2
hsa-miR-345-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567448
Biotype: lincRNA
Gene id: ENSG00000260186
Gene Name: RP11-481J2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-96
0.027
0
XLOC_004258
hsa-miR-345-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009846
Biotype: transcript isomorph
Gene id: XLOC_004258
Gene Name: XLOC_004258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1003-1019
0.014
1
9mer
226-250
0.013
1
CTD-3023L14.3
hsa-miR-345-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524008
Biotype: lincRNA
Gene id: ENSG00000253343
Gene Name: CTD-3023L14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-313
0.018
1
8mer
58-68
0.009
0
RP11-706O15.1
hsa-miR-345-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000486571
Biotype: lincRNA
Gene id: ENSG00000205664
Gene Name: RP11-706O15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
830-846
0.022
0
6mer
504-525
0.005
0
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