LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
XLOC_007013
hsa-miR-345-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014939
Biotype: transcript isomorph
Gene id: XLOC_007013
Gene Name: XLOC_007013
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
259-281
0.021
1
6mer
519-534
0.007
1
AC016735.2
hsa-miR-345-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422351
Biotype: lincRNA
Gene id: ENSG00000231826
Gene Name: AC016735.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-248
0.028
1
XLOC_002010
hsa-miR-345-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004165
Biotype: transcript isomorph
Gene id: XLOC_002010
Gene Name: XLOC_002010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2811-2829
0.015
1
9mer
9-26
0.010
2
6mer
2368-2395
0.002
1
6mer
1921-1944
0.002
1
RP11-126O1.6
hsa-miR-345-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622763
Biotype: lincRNA
Gene id: ENSG00000275418
Gene Name: RP11-126O1.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-175
0.028
0
LMCD1-AS1
hsa-miR-345-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420095
Biotype: antisense
Gene id: ENSG00000227110
Gene Name: LMCD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1104-1131
0.021
Not Conserved
7mer
937-954
0.007
0
XLOC_003430
hsa-miR-345-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007958
Biotype: transcript isomorph
Gene id: XLOC_003430
Gene Name: XLOC_003430
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-121
0.028
1
CFLAR-AS1
hsa-miR-345-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415011
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
618-638
0.028
5
DKFZp451B082
hsa-miR-345-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_033862.1
Biotype: lincRNA
Gene id: NR_033862.1 (gene)
Gene Name: DKFZp451B082
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-636
0.019
0
8mer
1220-1243
0.004
0
6mer
3572-3589
0.002
2
6mer
2373-2399
0.001
1
6mer
2729-2752
0.001
1
6mer
1780-1799
0.001
0
FLJ37505
hsa-miR-345-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536342
Biotype: lincRNA
Gene id: ENSG00000256597
Gene Name: FLJ37505
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-74
0.028
1
XLOC_008295
hsa-miR-345-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4004-4018
0.014
0
7mer
1507-1527
0.014
0
TTTY15
hsa-miR-345-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4004-4018
0.014
0
7mer
1507-1527
0.014
0
AC073254.1
hsa-miR-345-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601434
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
230-245
0.025
4
6mer
373-386
0.003
0
AC078842.4
hsa-miR-345-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447529
Biotype: lincRNA
Gene id: ENSG00000231114
Gene Name: AC078842.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-139
0.028
3
CTC-479C5.6
hsa-miR-345-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574912
Biotype: antisense
Gene id: ENSG00000263201
Gene Name: CTC-479C5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
760-775
0.028
3
RP11-200A1.1
hsa-miR-345-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482019
Biotype: lincRNA
Gene id: ENSG00000240006
Gene Name: RP11-200A1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-85
0.028
4
RP11-356J5.12
hsa-miR-345-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000504610
Biotype: lincRNA
Gene id: ENSG00000250303
Gene Name: RP11-356J5.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2387-2412
0.012
1
7mer
1876-1896
0.005
3
7mer
1235-1255
0.005
1
7mer
1971-1990
0.005
2
XLOC_013553
hsa-miR-345-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028205
Biotype: transcript isomorph
Gene id: XLOC_013553
Gene Name: XLOC_013553
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
973-997
0.010
1
6mer
6522-6546
0.008
1
6mer
6604-6621
0.007
1
8mer
2906-2930
0.003
0
TTTY15
hsa-miR-345-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3971-3985
0.014
0
7mer
1474-1494
0.014
0
AC004870.3
hsa-miR-345-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000455078
Biotype: lincRNA
Gene id: ENSG00000229192
Gene Name: AC004870.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-297
0.027
1
RP11-554I8.2
hsa-miR-345-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000417112
Biotype: lincRNA
Gene id: ENSG00000223784
Gene Name: RP11-554I8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
491-507
0.013
9
7mer
539-565
0.009
5
6mer
787-805
0.006
1
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