LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
LINC01061
hsa-miR-345-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037596.1
Biotype: lincRNA
Gene id: NR_037596.1 (gene)
Gene Name: LINC01061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-618
0.007
0
7mer
4569-4591
0.007
0
7mer
3927-3950
0.004
0
8mer
1392-1418
0.003
0
6mer
1878-1893
0.002
0
7mer
2465-2488
0.002
0
7mer
2153-2175
0.001
0
6mer
3832-3850
0.001
0
6mer
2216-2238
0.001
0
6mer
1519-1540
0.001
0
CASC23
hsa-miR-345-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534076
Biotype: antisense
Gene id: ENSG00000255420
Gene Name: CASC23
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
968-986
0.012
1
8mer
784-802
0.011
1
6mer
606-628
0.006
1
XLOC_008826
hsa-miR-345-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018518
Biotype: transcript isomorph
Gene id: XLOC_008826
Gene Name: XLOC_008826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-197
0.019
1
6mer
4163-4176
0.005
0
7mer
1521-1546
0.005
0
RP11-855O10.2
hsa-miR-345-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000506329
Biotype: lincRNA
Gene id: ENSG00000250230
Gene Name: RP11-855O10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1290-1306
0.015
4
7mer
1656-1676
0.009
1
8mer
840-856
0.004
0
RP11-108M9.3
hsa-miR-345-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619677
Biotype: pseudogene
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-218
0.015
0
7mer
13-33
0.013
1
RP11-86H7.7
hsa-miR-345-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435559
Biotype: lincRNA
Gene id: ENSG00000235565
Gene Name: RP11-86H7.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-494
0.021
4
8mer
1804-1822
0.008
0
XLOC_009147
hsa-miR-345-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019096
Biotype: transcript isomorph
Gene id: XLOC_009147
Gene Name: XLOC_009147
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1300-1316
0.015
4
7mer
1666-1686
0.009
1
8mer
850-866
0.004
0
RP11-165F24.3
hsa-miR-345-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000588474
Biotype: antisense
Gene id: ENSG00000227155
Gene Name: RP11-165F24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-60
0.029
2
LINC00454
hsa-miR-345-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609861
Biotype: lincRNA
Gene id: ENSG00000226921
Gene Name: LINC00454
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-530
0.029
0
XLOC_006270
hsa-miR-345-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013607
Biotype: transcript isomorph
Gene id: XLOC_006270
Gene Name: XLOC_006270
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-122
0.028
1
XLOC_000471
hsa-miR-345-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000339
Biotype: transcript isomorph
Gene id: XLOC_000471
Gene Name: XLOC_000471
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
425-449
0.028
1
RP11-165F24.3
hsa-miR-345-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000585819
Biotype: antisense
Gene id: ENSG00000227155
Gene Name: RP11-165F24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-69
0.028
2
ZBTB20-AS1
hsa-miR-345-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496219
Biotype: antisense
Gene id: ENSG00000241560
Gene Name: ZBTB20-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-165
0.028
4
ZBTB20-AS1
hsa-miR-345-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475939
Biotype: antisense
Gene id: ENSG00000241560
Gene Name: ZBTB20-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-141
0.028
4
RP11-248J18.2
hsa-miR-345-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602954
Biotype: sense_intronic
Gene id: ENSG00000269906
Gene Name: RP11-248J18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-462
0.028
3
CTC-482H14.5
hsa-miR-345-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592429
Biotype: antisense
Gene id: ENSG00000267550
Gene Name: CTC-482H14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-118
0.028
1
ST3GAL5-AS1
hsa-miR-345-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455121
Biotype: lincRNA
Gene id: ENSG00000232504
Gene Name: ST3GAL5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
556-581
0.028
3
XLOC_007978
hsa-miR-345-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017167
Biotype: transcript isomorph
Gene id: XLOC_007978
Gene Name: XLOC_007978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-120
0.028
0
RP11-525K10.1
hsa-miR-345-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567851
Biotype: lincRNA
Gene id: ENSG00000260706
Gene Name: RP11-525K10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
435-454
0.028
4
AC092295.4
hsa-miR-345-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000446262
Biotype: antisense
Gene id: ENSG00000228629
Gene Name: AC092295.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-100
0.028
1
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