LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
RP11-261P13.6
hsa-miR-345-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000619006
Biotype: sense_intronic
Gene id: ENSG00000275485
Gene Name: RP11-261P13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
452-468
0.029
0
RP11-1000B6.7
hsa-miR-345-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616244
Biotype: sense_intronic
Gene id: ENSG00000276724
Gene Name: RP11-1000B6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
450-468
0.016
0
6mer
560-586
0.013
0
LINC00454
hsa-miR-345-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000442500
Biotype: lincRNA
Gene id: ENSG00000226921
Gene Name: LINC00454
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-530
0.029
0
FAM95B1
hsa-miR-345-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455995
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
249-271
0.008
1
7mer
532-559
0.006
1
6mer
433-459
0.005
1
6mer
289-316
0.005
1
6mer
1048-1075
0.002
0
6mer
1685-1710
0.002
0
6mer
1865-1883
0.001
0
RP11-318E3.9
hsa-miR-345-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608273
Biotype: lincRNA
Gene id: ENSG00000272764
Gene Name: RP11-318E3.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-228
0.029
0
XLOC_006031
hsa-miR-345-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012987
Biotype: transcript isomorph
Gene id: XLOC_006031
Gene Name: XLOC_006031
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
334-355
0.029
0
CTB-43E15.1
hsa-miR-345-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523242
Biotype: lincRNA
Gene id: ENSG00000253959
Gene Name: CTB-43E15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
383-403
0.027
3
8mer+wobble
51-69
0.003
Not Conserved
FAM95B1
hsa-miR-345-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000620585
Biotype: retained_intron
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
250-272
0.008
1
7mer
533-560
0.006
1
6mer
434-460
0.005
1
6mer
290-317
0.004
1
6mer
1049-1076
0.002
0
6mer
1686-1711
0.002
0
6mer
1866-1884
0.001
0
RP11-515E23.1
hsa-miR-345-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577089
Biotype: lincRNA
Gene id: ENSG00000261873
Gene Name: RP11-515E23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19-38
0.029
Not Conserved
XLOC_006874
hsa-miR-345-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014799
Biotype: transcript isomorph
Gene id: XLOC_006874
Gene Name: XLOC_006874
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-397
0.029
2
KCTD21-AS1
hsa-miR-345-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000600795
Biotype: antisense
Gene id: ENSG00000246174
Gene Name: KCTD21-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-230
0.020
8
8mer
688-706
0.009
5
RMST
hsa-miR-345-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538559
Biotype: lincRNA
Gene id: ENSG00000255794
Gene Name: RMST
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2047-2061
0.025
7
7mer
1258-1272
0.004
3
AC022154.7
hsa-miR-345-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600303
Biotype: antisense
Gene id: ENSG00000268093
Gene Name: AC022154.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-596
0.027
4
6mer
24-36
0.002
1
PPIEL
hsa-miR-345-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440190
Biotype: antisense
Gene id: ENSG00000182109
Gene Name: PPIEL
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-228
0.029
1
XLOC_008583
hsa-miR-345-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018307
Biotype: transcript isomorph
Gene id: XLOC_008583
Gene Name: XLOC_008583
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
379-399
0.018
1
7mer
1492-1518
0.010
1
6mer
1583-1596
0.001
0
AL035610.1
hsa-miR-345-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609782
Biotype: retained_intron
Gene id: ENSG00000232079
Gene Name: AL035610.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-535
0.023
1
7mer
566-589
0.006
0
MGC27345
hsa-miR-345-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6568-6584
0.018
1
9mer
3032-3049
0.005
0
6mer
2406-2427
0.002
1
6mer
2838-2862
0.002
2
6mer
1228-1255
0.001
1
6mer
4170-4185
0.001
0
RP11-855O10.2
hsa-miR-345-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_110189.1
Biotype: lincRNA
Gene id: NR_110189.1 (gene)
Gene Name: RP11-855O10.2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1290-1306
0.015
4
7mer
1656-1676
0.009
1
8mer
840-856
0.004
0
MAPT-AS1
hsa-miR-345-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581125
Biotype: antisense
Gene id: ENSG00000264589
Gene Name: MAPT-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-196
0.029
2
AC073254.1
hsa-miR-345-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608132
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-224
0.026
4
6mer
352-365
0.003
0
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