LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
XLOC_003734
hsa-miR-345-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008904
Biotype: transcript isomorph
Gene id: XLOC_003734
Gene Name: XLOC_003734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2621-2642
0.017
4
6mer
580-603
0.004
1
6mer
436-454
0.003
1
6mer
2892-2912
0.003
0
6mer
1784-1808
0.002
1
6mer
1524-1546
0.002
2
LL22NC03-22D1.1
hsa-miR-345-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23897-23915
0.008
1
8mer
10315-10328
0.005
1
7mer
12184-12203
0.003
0
6mer
28553-28561
0.002
0
6mer
8818-8839
0.002
4
6mer
15051-15073
0.002
1
6mer
17636-17660
0.002
2
6mer
1860-1885
0.002
2
6mer
11259-11286
0.002
Not Conserved
6mer
17168-17180
0.001
0
6mer
25429-25454
0.001
1
LINC00570
hsa-miR-345-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432665
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
85-108
0.030
0
AC092669.2
hsa-miR-345-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437790
Biotype: lincRNA
Gene id: ENSG00000241254
Gene Name: AC092669.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-291
0.030
4
RP11-265N7.1
hsa-miR-345-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560743
Biotype: lincRNA
Gene id: ENSG00000259450
Gene Name: RP11-265N7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
665-691
0.023
5
6mer
51-76
0.006
4
6mer
657-670
0.001
0
FLJ12825
hsa-miR-345-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000515617
Biotype: lincRNA
Gene id: ENSG00000248265
Gene Name: FLJ12825
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-637
0.023
0
7mer
960-977
0.005
0
6mer
3046-3065
0.001
0
6mer
3046-3069
0.001
1
RP11-252E2.1
hsa-miR-345-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000499110
Biotype: antisense
Gene id: ENSG00000247033
Gene Name: RP11-252E2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-532
0.030
8
LINC00570
hsa-miR-345-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437795
Biotype: lincRNA
Gene id: ENSG00000224177
Gene Name: LINC00570
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-378
0.030
0
LINC01140
hsa-miR-345-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000469312
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1006-1017
0.021
9
6mer
297-311
0.006
4
6mer
735-753
0.003
1
XLOC_008283
hsa-miR-345-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017573
Biotype: transcript isomorph
Gene id: XLOC_008283
Gene Name: XLOC_008283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
860-874
0.016
0
6mer
723-733
0.014
0
RP11-467K18.2
hsa-miR-345-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000521394
Biotype: antisense
Gene id: ENSG00000253973
Gene Name: RP11-467K18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
818-832
0.030
3
RP11-174G17.2
hsa-miR-345-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569711
Biotype: lincRNA
Gene id: ENSG00000261781
Gene Name: RP11-174G17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1865-1891
0.015
1
8mer
298-313
0.010
0
6mer
103-126
0.004
1
OTUD6B-AS1
hsa-miR-345-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522817
Biotype: antisense
Gene id: ENSG00000253738
Gene Name: OTUD6B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
174-194
0.016
0
8mer
4237-4256
0.007
0
9mer
1252-1275
0.005
0
6mer
1955-1979
0.002
2
XLOC_010574
hsa-miR-345-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021973
Biotype: transcript isomorph
Gene id: XLOC_010574
Gene Name: XLOC_010574
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1107-1125
0.030
2
RP11-53B2.2
hsa-miR-345-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587344
Biotype: sense_intronic
Gene id: ENSG00000267702
Gene Name: RP11-53B2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2463-2486
0.013
1
8mer
52-75
0.009
0
6mer
3807-3818
0.006
1
6mer
874-891
0.002
0
NEAT1
hsa-miR-345-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-375
0.010
0
8mer+wobble
969-990
0.006
2
7mer
17968-17992
0.003
0
6mer
18715-18734
0.003
2
6mer
16914-16930
0.003
1
6mer
16720-16746
0.002
0
6mer
17079-17098
0.001
0
8mer+mismatch
17727-17753
0.001
1
XLOC_004517
hsa-miR-345-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010065
Biotype: transcript isomorph
Gene id: XLOC_004517
Gene Name: XLOC_004517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-195
0.030
2
RP4-568C11.4
hsa-miR-345-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-264
0.029
0
RP11-47L3.1
hsa-miR-345-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585387
Biotype: lincRNA
Gene id: ENSG00000267364
Gene Name: RP11-47L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
455-470
0.016
0
6mer
63-85
0.014
0
XLOC_001036
hsa-miR-345-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002486
Biotype: transcript isomorph
Gene id: XLOC_001036
Gene Name: XLOC_001036
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-23
0.025
1
6mer
550-573
0.004
3
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