LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
AC007403.2
hsa-miR-345-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426260
Biotype: lincRNA
Gene id: ENSG00000230525
Gene Name: AC007403.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-566
0.032
4
LINC00454
hsa-miR-345-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000610194
Biotype: lincRNA
Gene id: ENSG00000226921
Gene Name: LINC00454
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-219
0.032
0
AC009508.1
hsa-miR-345-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412828
Biotype: lincRNA
Gene id: ENSG00000227930
Gene Name: AC009508.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-181
0.032
2
ZBTB20-AS1
hsa-miR-345-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467304
Biotype: antisense
Gene id: ENSG00000241560
Gene Name: ZBTB20-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-90
0.032
4
AC013275.2
hsa-miR-345-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457436
Biotype: antisense
Gene id: ENSG00000231013
Gene Name: AC013275.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-130
0.027
1
6mer
95-103
0.005
1
CTC-537E7.3
hsa-miR-345-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507733
Biotype: lincRNA
Gene id: ENSG00000248884
Gene Name: CTC-537E7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-361
0.017
3
7mer
51-70
0.014
1
LINC00454
hsa-miR-345-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608044
Biotype: lincRNA
Gene id: ENSG00000226921
Gene Name: LINC00454
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-226
0.032
0
LINC00454
hsa-miR-345-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609493
Biotype: lincRNA
Gene id: ENSG00000226921
Gene Name: LINC00454
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-226
0.032
0
AC008103.4
hsa-miR-345-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623570
Biotype: sense_intronic
Gene id: ENSG00000279987
Gene Name: AC008103.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
56-72
0.017
1
6mer
702-714
0.015
1
AP000997.2
hsa-miR-345-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-260
0.013
0
7mer
8272-8286
0.006
0
7mer
2190-2209
0.005
0
7mer
4395-4416
0.004
2
7mer
2446-2467
0.003
1
6mer
3734-3750
0.001
1
AC116366.5
hsa-miR-345-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000454380
Biotype: antisense
Gene id: ENSG00000238160
Gene Name: AC116366.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-240
0.031
1
XLOC_008645
hsa-miR-345-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018842
Biotype: transcript isomorph
Gene id: XLOC_008645
Gene Name: XLOC_008645
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-32
0.031
3
XLOC_013737
hsa-miR-345-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027888
Biotype: transcript isomorph
Gene id: XLOC_013737
Gene Name: XLOC_013737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1889-1911
0.031
2
PISRT1
hsa-miR-345-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_027070.1
Biotype: antisense
Gene id: NR_027070.1 (gene)
Gene Name: PISRT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-87
0.031
1
RP11-438B23.2
hsa-miR-345-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
958-975
0.028
8
7mer
2427-2452
0.003
2
XLOC_006739
hsa-miR-345-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014649
Biotype: transcript isomorph
Gene id: XLOC_006739
Gene Name: XLOC_006739
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-126
0.031
1
RP4-564F22.5
hsa-miR-345-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000422519
Biotype: lincRNA
Gene id: ENSG00000224635
Gene Name: RP4-564F22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1891-1913
0.031
2
XLOC_009367
hsa-miR-345-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019117
Biotype: transcript isomorph
Gene id: XLOC_009367
Gene Name: XLOC_009367
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
966-993
0.013
1
8mer
782-800
0.011
1
6mer
604-626
0.006
1
XLOC_007099
hsa-miR-345-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015023
Biotype: transcript isomorph
Gene id: XLOC_007099
Gene Name: XLOC_007099
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2305-2322
0.015
1
7mer
383-400
0.010
1
6mer
2442-2459
0.004
1
6mer
1248-1272
0.003
1
AC005537.2
hsa-miR-345-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585996
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-213
0.031
1
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