LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-345-5p


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Gene
miRNA
Score
DIANA Links
TTTY2
hsa-miR-345-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000417072
Biotype: lincRNA
Gene id: ENSG00000212855
Gene Name: TTTY2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-323
0.020
Not Conserved
8mer
2834-2856
0.014
Not Conserved
XLOC_010884
hsa-miR-345-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022565
Biotype: transcript isomorph
Gene id: XLOC_010884
Gene Name: XLOC_010884
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-174
0.028
0
7mer
153-166
0.006
Not Conserved
XLOC_011730
hsa-miR-345-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024847
Biotype: transcript isomorph
Gene id: XLOC_011730
Gene Name: XLOC_011730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-90
0.034
5
RP11-142E9.1
hsa-miR-345-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000621575
Biotype: sense_intronic
Gene id: ENSG00000276672
Gene Name: RP11-142E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-125
0.023
1
7mer
3271-3294
0.006
0
6mer
1319-1337
0.004
2
WNT5A-AS1
hsa-miR-345-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469484
Biotype: antisense
Gene id: ENSG00000244586
Gene Name: WNT5A-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-95
0.033
6
AC007246.3
hsa-miR-345-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425775
Biotype: antisense
Gene id: ENSG00000231312
Gene Name: AC007246.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-252
0.032
8
6mer
30-53
0.002
Not Conserved
XLOC_011780
hsa-miR-345-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024252
Biotype: transcript isomorph
Gene id: XLOC_011780
Gene Name: XLOC_011780
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-302
0.028
7
6mer
109-129
0.005
6
CTC-304I17.2
hsa-miR-345-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577709
Biotype: antisense
Gene id: ENSG00000264791
Gene Name: CTC-304I17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-216
0.030
1
6mer
211-235
0.003
0
XLOC_013265
hsa-miR-345-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-306
0.033
0
AC068138.1
hsa-miR-345-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423838
Biotype: lincRNA
Gene id: ENSG00000235070
Gene Name: AC068138.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
854-880
0.033
3
NPTN-IT1
hsa-miR-345-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_103844.1
Biotype: sense
Gene id: NR_103844.1 (gene)
Gene Name: NPTN-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2391-2415
0.030
3
6mer
1420-1446
0.003
3
AC004158.3
hsa-miR-345-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000624327
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-302
0.028
7
6mer
109-129
0.005
6
EHHADH-AS1
hsa-miR-345-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000417720
Biotype: antisense
Gene id: ENSG00000223358
Gene Name: EHHADH-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
799-817
0.033
3
GAS5
hsa-miR-345-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431268
Biotype: retained_intron
Gene id: ENSG00000234741
Gene Name: GAS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-413
0.033
1
XLOC_009079
hsa-miR-345-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019861
Biotype: transcript isomorph
Gene id: XLOC_009079
Gene Name: XLOC_009079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
614-629
0.013
0
6mer
643-661
0.013
3
7mer
320-342
0.007
1
RP11-1149O23.3
hsa-miR-345-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500853
Biotype: antisense
Gene id: ENSG00000246582
Gene Name: RP11-1149O23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1531-1553
0.033
0
RP4-717I23.3
hsa-miR-345-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451302
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-125
0.033
4
XLOC_006704
hsa-miR-345-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014602
Biotype: transcript isomorph
Gene id: XLOC_006704
Gene Name: XLOC_006704
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1274-1291
0.033
5
RP11-525A16.4
hsa-miR-345-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609514
Biotype: lincRNA
Gene id: ENSG00000273143
Gene Name: RP11-525A16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-162
0.033
1
AF067845.1
hsa-miR-345-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000567210
Biotype: lincRNA
Gene id: ENSG00000260721
Gene Name: AF067845.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-345-5p
Sequence: gcugacuccuaguccagggcuc
MirBase ID: MIMAT0000772
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
107-134
0.033
1
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