LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
LOC100130093
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_024485.1
Biotype: sense
Gene id: NR_024485.1 (gene)
Gene Name: LOC100130093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2216-2235
0.005
1
7mer
156-171
0.005
0
6mer
895-910
0.004
12
7mer
1395-1418
0.004
1
6mer
1562-1582
0.004
7
6mer
2099-2114
0.003
1
6mer
1249-1269
0.001
0
FAM138F
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000448235
Biotype: lincRNA
Gene id: ENSG00000233630
Gene Name: FAM138F
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1020-1039
0.016
1
7mer
1106-1119
0.005
1
6mer
1062-1084
0.004
1
XLOC_013189
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026758
Biotype: transcript isomorph
Gene id: XLOC_013189
Gene Name: XLOC_013189
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
962-981
0.016
1
7mer
1048-1061
0.005
1
6mer
1004-1026
0.004
1
STARD13-AS
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607935
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
666-688
0.018
2
6mer
23-47
0.007
2
CTC-459F4.1
hsa-miR-324-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562493
Biotype: lincRNA
Gene id: ENSG00000261770
Gene Name: CTC-459F4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-173
0.005
Not Conserved
6mer
622-635
0.004
0
6mer
692-708
0.002
0
6mer
2945-2962
0.002
0
6mer
1257-1274
0.002
0
6mer
2495-2508
0.002
0
6mer
1006-1031
0.002
0
6mer
1915-1932
0.002
0
6mer
2157-2173
0.002
0
6mer
1675-1700
0.001
0
6mer
1605-1630
0.001
0
6mer
1845-1865
0.001
0
6mer
1780-1797
0.001
0
RP3-507I15.2
hsa-miR-324-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000566241
Biotype: lincRNA
Gene id: ENSG00000261212
Gene Name: RP3-507I15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-321
0.025
2
LINC00518
hsa-miR-324-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000479822
Biotype: lincRNA
Gene id: ENSG00000183674
Gene Name: LINC00518
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-107
0.025
7
XLOC_001583
hsa-miR-324-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002713
Biotype: transcript isomorph
Gene id: XLOC_001583
Gene Name: XLOC_001583
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
549-575
0.025
1
PCAT5
hsa-miR-324-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_110138.1
Biotype: lincRNA
Gene id: NR_110138.1 (gene)
Gene Name: PCAT5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2133-2142
0.018
2
6mer
66-85
0.004
0
6mer
1795-1813
0.003
3
LINC00599
hsa-miR-324-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517675
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-229
0.015
8
7mer
2233-2259
0.008
6
6mer
2815-2826
0.001
0
XLOC_001671
hsa-miR-324-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7008-7024
0.009
0
7mer
9910-9924
0.007
0
7mer
8476-8500
0.004
0
7mer
7342-7358
0.003
Not Conserved
6mer
6563-6576
0.001
0
6mer
6509-6535
0.001
Not Conserved
XLOC_010154
hsa-miR-324-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020872
Biotype: transcript isomorph
Gene id: XLOC_010154
Gene Name: XLOC_010154
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2074-2094
0.013
1
6mer
1595-1602
0.005
6
6mer
2092-2104
0.003
1
7mer
212-227
0.003
1
RP1-34M23.5
hsa-miR-324-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000542839
Biotype: antisense
Gene id: ENSG00000255811
Gene Name: RP1-34M23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-23
0.025
7
AC104654.2
hsa-miR-324-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436551
Biotype: lincRNA
Gene id: ENSG00000234362
Gene Name: AC104654.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
413-433
0.025
1
RP11-830F9.5
hsa-miR-324-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565053
Biotype: antisense
Gene id: ENSG00000259881
Gene Name: RP11-830F9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1905-1922
0.011
0
6mer
1549-1565
0.003
8
7mer
1114-1136
0.002
1
6mer
299-315
0.002
0
6mer
355-371
0.002
1
6mer
455-480
0.002
1
6mer
402-426
0.001
1
6mer
511-536
0.001
1
AC012442.6
hsa-miR-324-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436885
Biotype: lincRNA
Gene id: ENSG00000228251
Gene Name: AC012442.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-233
0.025
1
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