LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
AC009120.4
hsa-miR-324-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569389
Biotype: lincRNA
Gene id: ENSG00000261404
Gene Name: AC009120.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-79
0.025
1
KIZ-AS1
hsa-miR-324-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616177
Biotype: antisense
Gene id: ENSG00000232712
Gene Name: KIZ-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3949-3963
0.024
3
6mer
2703-2721
0.001
2
XLOC_008282
hsa-miR-324-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017630
Biotype: transcript isomorph
Gene id: XLOC_008282
Gene Name: XLOC_008282
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-164
0.025
1
LOC100130093
hsa-miR-324-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_024486.1
Biotype: sense
Gene id: NR_024486.1 (gene)
Gene Name: LOC100130093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
732-747
0.005
12
7mer
156-171
0.005
0
8mer
2053-2072
0.005
1
7mer
1232-1255
0.004
1
6mer
1399-1419
0.004
7
6mer
1936-1951
0.003
1
6mer
1086-1106
0.001
0
STARD13-AS
hsa-miR-324-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608197
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
544-566
0.018
2
6mer
23-47
0.007
2
H19
hsa-miR-324-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000414790
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1777-1790
0.007
0
7mer
1766-1790
0.004
0
7mer
1514-1530
0.004
0
6mer
1448-1464
0.003
5
6mer
1911-1926
0.003
3
6mer
1887-1912
0.003
2
6mer
1669-1692
0.001
1
SNHG14
hsa-miR-324-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000424333
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
886-903
0.025
2
DKFZP434A062
hsa-miR-324-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000573103
Biotype: lincRNA
Gene id: ENSG00000262075
Gene Name: DKFZP434A062
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-212
0.022
0
6mer
861-876
0.001
1
6mer
3570-3593
0.001
0
6mer
3482-3503
0.001
2
RP11-363E7.4
hsa-miR-324-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000563205
Biotype: sense_overlapping
Gene id: ENSG00000260912
Gene Name: RP11-363E7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1260-1283
0.019
1
7mer
683-709
0.006
1
XLOC_004712
hsa-miR-324-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009219
Biotype: transcript isomorph
Gene id: XLOC_004712
Gene Name: XLOC_004712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2347-2367
0.021
0
6mer
624-650
0.001
0
6mer
3039-3063
0.001
0
6mer
2270-2289
0.001
Not Conserved
6mer
2950-2974
0.001
Not Conserved
RP11-147L13.13
hsa-miR-324-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000622750
Biotype: lincRNA
Gene id: ENSG00000277476
Gene Name: RP11-147L13.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-543
0.010
0
8mer
650-666
0.010
0
8mer+mismatch
426-446
0.003
1
6mer
895-917
0.001
1
7mer
1267-1286
0.001
0
AC009501.4
hsa-miR-324-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429952
Biotype: antisense
Gene id: ENSG00000231609
Gene Name: AC009501.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1952-1974
0.013
1
7mer
383-400
0.009
7
6mer
1430-1443
0.003
4
FAM138F
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_026820.1
Biotype: lincRNA
Gene id: NR_026820.1 (gene)
Gene Name: FAM138F
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
963-982
0.016
1
7mer
1049-1062
0.005
1
6mer
1005-1027
0.004
1
KCNMA1-AS1
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429850
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
243-264
0.025
0
RP11-218M11.1
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000563063
Biotype: lincRNA
Gene id: ENSG00000259928
Gene Name: RP11-218M11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
957-981
0.015
Not Conserved
7mer
404-428
0.005
0
8mer
452-463
0.003
Not Conserved
6mer
838-861
0.001
Not Conserved
6mer
824-848
0.000
Not Conserved
STARD13-AS
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608205
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
701-723
0.018
2
6mer
46-70
0.007
2
XLOC_004201
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007922
Biotype: transcript isomorph
Gene id: XLOC_004201
Gene Name: XLOC_004201
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-635
0.019
0
6mer
403-415
0.004
2
6mer
1147-1171
0.002
1
AC114271.2
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000612689
Biotype: antisense
Gene id: ENSG00000274425
Gene Name: AC114271.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-483
0.020
3
6mer
1899-1915
0.002
2
6mer
2350-2364
0.002
0
6mer
1031-1055
0.001
0
XLOC_012582
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025772
Biotype: transcript isomorph
Gene id: XLOC_012582
Gene Name: XLOC_012582
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-297
0.021
0
6mer
950-971
0.004
0
DKFZP434K028
hsa-miR-324-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000536405
Biotype: lincRNA
Gene id: ENSG00000124915
Gene Name: DKFZP434K028
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
760-780
0.012
1
8mer
1317-1343
0.010
0
7mer
2015-2031
0.003
0
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