LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
XLOC_000022
hsa-miR-324-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000807
Biotype: transcript isomorph
Gene id: XLOC_000022
Gene Name: XLOC_000022
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3440-3453
0.011
1
7mer
3544-3564
0.007
1
8mer
2997-3013
0.004
0
7mer
2114-2131
0.003
0
6mer
3275-3297
0.002
1
7mer
2756-2780
0.001
0
6mer
3009-3029
0.000
0
RP11-153F5.7
hsa-miR-324-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619952
Biotype: sense_intronic
Gene id: ENSG00000278185
Gene Name: RP11-153F5.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-53
0.018
0
6mer
390-410
0.006
3
8mer
232-246
0.004
0
HAGLROS
hsa-miR-324-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426615
Biotype: lincRNA
Gene id: ENSG00000226363
Gene Name: HAGLROS
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-235
0.028
2
H19
hsa-miR-324-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000412788
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1758-1771
0.007
0
7mer
1747-1771
0.004
0
6mer
1892-1907
0.004
3
7mer
1495-1511
0.004
0
6mer
1429-1445
0.004
5
6mer
1868-1893
0.003
2
6mer
1650-1673
0.001
1
CTD-2012K14.4
hsa-miR-324-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564717
Biotype: antisense
Gene id: ENSG00000260894
Gene Name: CTD-2012K14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-65
0.026
2
6mer
104-120
0.002
0
AC004540.5
hsa-miR-324-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449537
Biotype: lincRNA
Gene id: ENSG00000214870
Gene Name: AC004540.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
573-595
0.013
2
6mer
85-108
0.009
6
6mer
441-462
0.002
Not Conserved
6mer
508-531
0.002
1
6mer
50-69
0.001
3
TEX41
hsa-miR-324-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431734
Biotype: lincRNA
Gene id: ENSG00000226674
Gene Name: TEX41
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-438
0.028
3
MROH7-TTC4
hsa-miR-324-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037640.1
Biotype: sense
Gene id: NR_037640.1 (gene)
Gene Name: MROH7-TTC4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-40
0.009
0
7mer
5698-5718
0.007
0
8mer
55-70
0.004
Not Conserved
6mer
5026-5036
0.003
5
6mer
4385-4403
0.002
9
6mer
4822-4848
0.002
7
6mer
4050-4070
0.001
2
CTD-2357A8.3
hsa-miR-324-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586185
Biotype: lincRNA
Gene id: ENSG00000267123
Gene Name: CTD-2357A8.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-721
0.028
0
RP11-1049H7.2
hsa-miR-324-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517731
Biotype: lincRNA
Gene id: ENSG00000253805
Gene Name: RP11-1049H7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-205
0.025
0
6mer
75-94
0.003
0
XLOC_005392
hsa-miR-324-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011181
Biotype: transcript isomorph
Gene id: XLOC_005392
Gene Name: XLOC_005392
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1456-1475
0.014
0
7mer
1786-1799
0.007
4
7mer
737-761
0.003
1
6mer
8271-8286
0.002
1
6mer
8079-8102
0.001
1
6mer
8277-8292
0.001
2
C1orf140
hsa-miR-324-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439004
Biotype: lincRNA
Gene id: ENSG00000234754
Gene Name: C1orf140
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3731-3752
0.016
1
6mer
4241-4256
0.005
1
6mer
4247-4272
0.004
0
7mer
1611-1623
0.003
Not Conserved
RP11-862G15.2
hsa-miR-324-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555299
Biotype: lincRNA
Gene id: ENSG00000258499
Gene Name: RP11-862G15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
644-660
0.024
0
6mer
1104-1115
0.004
2
CTD-2313F11.1
hsa-miR-324-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000608466
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-698
0.028
1
RP11-1038A11.1
hsa-miR-324-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538430
Biotype: lincRNA
Gene id: ENSG00000255983
Gene Name: RP11-1038A11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
44-68
0.028
1
CTA-941F9.10
hsa-miR-324-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5513-5530
0.008
0
7mer
10705-10725
0.005
1
7mer
13907-13932
0.003
0
6mer
224-241
0.003
Not Conserved
7mer
15572-15587
0.003
0
6mer
7158-7175
0.001
1
7mer
5605-5612
0.001
1
8mer
3442-3457
0.001
Not Conserved
6mer
5804-5820
0.001
1
7mer
15663-15680
0.001
0
8mer+wobble
15348-15364
0.000
0
6mer
14866-14890
0.000
0
6mer
15171-15194
0.000
0
6mer
15583-15602
0.000
0
LINC01320
hsa-miR-324-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423663
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
457-477
0.028
1
LINC00518
hsa-miR-324-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000487130
Biotype: lincRNA
Gene id: ENSG00000183674
Gene Name: LINC00518
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
261-277
0.028
7
RP11-305A4.3
hsa-miR-324-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563124
Biotype: lincRNA
Gene id: ENSG00000261751
Gene Name: RP11-305A4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1301-1320
0.024
8
6mer
143-164
0.002
1
6mer
1065-1079
0.002
2
ABC12-49244600F4.4
hsa-miR-324-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619522
Biotype: lincRNA
Gene id: ENSG00000276144
Gene Name: ABC12-49244600F4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-260
0.028
1
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