LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
RP11-447M4.1
hsa-miR-324-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570082
Biotype: lincRNA
Gene id: ENSG00000260670
Gene Name: RP11-447M4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2475-2494
0.020
3
8mer
2646-2662
0.008
1
6mer
297-313
0.003
1
MIAT
hsa-miR-324-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616469
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9366-9387
0.013
0
7mer
5168-5185
0.004
4
8mer
4970-4990
0.002
2
7mer
2432-2456
0.002
1
7mer
7913-7924
0.002
0
6mer
2247-2260
0.002
1
6mer
1161-1182
0.002
2
6mer
8159-8185
0.001
1
6mer
8818-8828
0.001
Not Conserved
8mer+mismatch
4498-4516
0.001
0
6mer
4567-4583
0.001
1
AC025165.8
hsa-miR-324-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000444467
Biotype: antisense
Gene id: ENSG00000224713
Gene Name: AC025165.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
307-331
0.013
7
8mer
1502-1523
0.012
1
7mer
653-676
0.005
7
RP11-356J5.12
hsa-miR-324-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000504610
Biotype: lincRNA
Gene id: ENSG00000250303
Gene Name: RP11-356J5.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2480-2492
0.015
2
6mer
2436-2454
0.007
1
6mer
1972-1986
0.004
2
6mer
2698-2714
0.002
0
6mer
625-644
0.001
0
RP11-333E1.1
hsa-miR-324-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575601
Biotype: antisense
Gene id: ENSG00000261879
Gene Name: RP11-333E1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
413-437
0.030
0
MIAT
hsa-miR-324-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000613780
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9440-9461
0.013
0
7mer
5242-5259
0.004
4
8mer
5044-5064
0.002
2
7mer
7987-7998
0.002
0
7mer
2506-2530
0.002
1
6mer
1109-1130
0.002
2
6mer
2321-2334
0.001
1
6mer
8233-8259
0.001
1
6mer
8892-8902
0.001
Not Conserved
8mer+mismatch
4572-4590
0.001
0
6mer
4641-4657
0.001
1
STARD7-AS1
hsa-miR-324-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446816
Biotype: antisense
Gene id: ENSG00000204685
Gene Name: STARD7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1058-1084
0.026
0
7mer
716-742
0.003
0
6mer
252-274
0.001
0
XLOC_013309
hsa-miR-324-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027311
Biotype: transcript isomorph
Gene id: XLOC_013309
Gene Name: XLOC_013309
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-807
0.022
0
6mer
1906-1932
0.005
1
6mer
560-575
0.004
1
XLOC_013575
hsa-miR-324-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028231
Biotype: transcript isomorph
Gene id: XLOC_013575
Gene Name: XLOC_013575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-279
0.022
0
6mer
135-147
0.004
2
6mer
242-263
0.004
1
MIAT
hsa-miR-324-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9240-9261
0.013
0
7mer
5042-5059
0.003
4
8mer
4844-4864
0.002
2
7mer
2306-2330
0.002
1
7mer
7787-7798
0.002
0
6mer
1035-1056
0.002
2
6mer
2121-2134
0.002
1
6mer
8033-8059
0.001
1
6mer
8692-8702
0.001
Not Conserved
8mer+mismatch
4372-4390
0.001
0
6mer
4441-4457
0.001
1
RP13-890H12.2
hsa-miR-324-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589796
Biotype: antisense
Gene id: ENSG00000267288
Gene Name: RP13-890H12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1326-1343
0.010
1
7mer
1825-1841
0.009
2
7mer
277-293
0.007
3
7mer
1965-1985
0.005
1
AC139099.5
hsa-miR-324-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570366
Biotype: lincRNA
Gene id: ENSG00000262094
Gene Name: AC139099.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-63
0.030
1
RP11-65D24.1
hsa-miR-324-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000401043
Biotype: lincRNA
Gene id: ENSG00000215881
Gene Name: RP11-65D24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-249
0.027
1
6mer
152-173
0.003
1
RP11-168O16.1
hsa-miR-324-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446333
Biotype: antisense
Gene id: ENSG00000229191
Gene Name: RP11-168O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1219-1237
0.022
2
7mer
2155-2178
0.007
0
6mer
630-647
0.002
3
KB-1572G7.2
hsa-miR-324-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000423913
Biotype: processed_transcript
Gene id: ENSG00000273000
Gene Name: KB-1572G7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-422
0.017
0
7mer
223-242
0.013
0
AC139099.5
hsa-miR-324-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574098
Biotype: lincRNA
Gene id: ENSG00000262094
Gene Name: AC139099.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-390
0.018
1
6mer
2135-2156
0.005
0
6mer
1786-1806
0.004
0
6mer
1213-1237
0.002
1
WWTR1-AS1
hsa-miR-324-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479752
Biotype: antisense
Gene id: ENSG00000241313
Gene Name: WWTR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
93-108
0.030
7
RP11-168O16.1
hsa-miR-324-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458003
Biotype: antisense
Gene id: ENSG00000229191
Gene Name: RP11-168O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1216-1234
0.021
2
6mer
2832-2850
0.004
Not Conserved
7mer
2152-2175
0.003
0
6mer
627-644
0.002
3
RP11-526A4.1
hsa-miR-324-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502345
Biotype: lincRNA
Gene id: ENSG00000234828
Gene Name: RP11-526A4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
389-398
0.030
1
XLOC_005715
hsa-miR-324-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012166
Biotype: transcript isomorph
Gene id: XLOC_005715
Gene Name: XLOC_005715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1435-1453
0.024
2
8mer+mismatch
3603-3625
0.005
1
7mer
2118-2138
0.002
0
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