LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
RP11-498C9.16
hsa-miR-324-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579981
Biotype: lincRNA
Gene id: ENSG00000263859
Gene Name: RP11-498C9.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
671-686
0.031
1
ABHD11-AS1
hsa-miR-324-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000427153
Biotype: antisense
Gene id: ENSG00000225969
Gene Name: ABHD11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-71
0.020
1
7mer
70-83
0.011
1
UCA1
hsa-miR-324-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397381
Biotype: lincRNA
Gene id: ENSG00000214049
Gene Name: UCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1408-1433
0.018
1
6mer
2148-2170
0.014
1
ITGA9-AS1
hsa-miR-324-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000614028
Biotype: antisense
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-94
0.029
3
6mer
527-550
0.002
0
XLOC_003130
hsa-miR-324-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007175
Biotype: transcript isomorph
Gene id: XLOC_003130
Gene Name: XLOC_003130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-239
0.020
3
8mer
50-75
0.008
0
7mer
122-144
0.003
1
LINC00346
hsa-miR-324-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000538077
Biotype: lincRNA
Gene id: ENSG00000255874
Gene Name: LINC00346
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-750
0.010
0
6mer
344-365
0.006
1
6mer
559-584
0.005
0
6mer
146-159
0.003
1
6mer
2390-2415
0.003
1
7mer
1334-1354
0.003
0
6mer
5736-5757
0.002
0
LINC00599
hsa-miR-324-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519461
Biotype: lincRNA
Gene id: ENSG00000253230
Gene Name: LINC00599
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-220
0.019
8
7mer
1889-1915
0.010
6
6mer
2471-2482
0.002
0
AC092635.1
hsa-miR-324-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000434509
Biotype: lincRNA
Gene id: ENSG00000229370
Gene Name: AC092635.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-157
0.031
1
LINC01299
hsa-miR-324-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520902
Biotype: lincRNA
Gene id: ENSG00000254081
Gene Name: LINC01299
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2329-2344
0.016
0
7mer
2407-2431
0.015
1
CTB-171A8.1
hsa-miR-324-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586169
Biotype: antisense
Gene id: ENSG00000266903
Gene Name: CTB-171A8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-74
0.031
1
RP11-481J2.1
hsa-miR-324-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566019
Biotype: antisense
Gene id: ENSG00000261078
Gene Name: RP11-481J2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
346-371
0.018
1
6mer
335-355
0.013
1
RP11-139B1.1
hsa-miR-324-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551761
Biotype: lincRNA
Gene id: ENSG00000257476
Gene Name: RP11-139B1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-329
0.031
2
TSIX
hsa-miR-324-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16916-16943
0.014
0
9mer
9355-9382
0.005
1
7mer
2422-2443
0.004
1
6mer
29799-29816
0.003
3
6mer
10463-10477
0.002
0
6mer
15966-15981
0.001
Not Conserved
6mer
10802-10827
0.001
0
6mer
9308-9334
0.001
0
6mer
10471-10491
0.000
0
6mer
9424-9445
0.000
1
MIAT
hsa-miR-324-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620145
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9366-9387
0.013
0
7mer
5168-5185
0.004
4
8mer
4970-4990
0.002
2
7mer
2432-2456
0.002
1
7mer
7913-7924
0.002
0
6mer
1035-1056
0.002
2
6mer
2247-2260
0.002
1
6mer
8159-8185
0.001
1
6mer
8818-8828
0.001
Not Conserved
8mer+mismatch
4498-4516
0.001
0
6mer
4567-4583
0.001
1
XLOC_004362
hsa-miR-324-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009934
Biotype: transcript isomorph
Gene id: XLOC_004362
Gene Name: XLOC_004362
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
359-373
0.028
1
6mer
859-886
0.003
1
DIO3OS
hsa-miR-324-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_002770.1
Biotype: lincRNA
Gene id: NR_002770.1 (gene)
Gene Name: DIO3OS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
583-603
0.015
1
7mer
203-221
0.005
1
7mer
1297-1315
0.004
1
6mer
249-264
0.003
1
7mer
2790-2809
0.002
0
8mer+wobble
2775-2798
0.001
Not Conserved
6mer
2785-2809
0.001
1
XLOC_004366
hsa-miR-324-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009941
Biotype: transcript isomorph
Gene id: XLOC_004366
Gene Name: XLOC_004366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12050-12071
0.009
0
8mer
6735-6753
0.007
Not Conserved
7mer
10191-10216
0.004
1
7mer
3709-3726
0.003
0
6mer
10161-10173
0.002
0
8mer+mismatch
8509-8525
0.002
1
6mer
2067-2083
0.002
0
6mer
4742-4768
0.001
0
6mer
6204-6217
0.001
0
RP11-783K16.10
hsa-miR-324-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000539086
Biotype: processed_transcript
Gene id: ENSG00000257069
Gene Name: RP11-783K16.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1976-2002
0.022
3
7mer
1315-1328
0.005
3
7mer
93-113
0.002
1
6mer
923-939
0.002
4
XLOC_005024
hsa-miR-324-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010505
Biotype: transcript isomorph
Gene id: XLOC_005024
Gene Name: XLOC_005024
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-515
0.027
1
6mer
90-109
0.003
3
RP11-138A9.1
hsa-miR-324-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000605249
Biotype: lincRNA
Gene id: ENSG00000271204
Gene Name: RP11-138A9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1126-1143
0.011
2
7mer
784-803
0.006
2
6mer
1732-1746
0.005
1
6mer
1537-1552
0.005
1
7mer
113-137
0.003
0
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