LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
RP11-386M24.10
hsa-miR-324-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000619490
Biotype: antisense
Gene id: ENSG00000275965
Gene Name: RP11-386M24.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-51
0.032
2
GAS6-AS1
hsa-miR-324-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000458001
Biotype: antisense
Gene id: ENSG00000233695
Gene Name: GAS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6245-6252
0.015
1
8mer+wobble
595-613
0.009
Not Conserved
7mer
4042-4065
0.002
1
8mer
5558-5579
0.002
1
6mer
6557-6569
0.001
0
6mer
1089-1104
0.001
Not Conserved
6mer
5510-5528
0.001
1
6mer
2159-2183
0.001
1
6mer
6572-6586
0.001
0
6mer
4074-4091
0.000
1
CTD-2240E14.4
hsa-miR-324-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589622
Biotype: antisense
Gene id: ENSG00000267387
Gene Name: CTD-2240E14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-614
0.017
3
8mer
852-867
0.015
0
RP4-561L24.3
hsa-miR-324-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000565336
Biotype: lincRNA
Gene id: ENSG00000260464
Gene Name: RP4-561L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-72
0.028
2
7mer
682-702
0.002
0
6mer
258-283
0.002
1
KB-1572G7.2
hsa-miR-324-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000421064
Biotype: processed_transcript
Gene id: ENSG00000273000
Gene Name: KB-1572G7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
505-528
0.014
0
7mer
322-341
0.012
0
6mer
2638-2658
0.003
1
6mer
859-880
0.001
0
6mer
1231-1246
0.001
0
XLOC_011107
hsa-miR-324-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022841
Biotype: transcript isomorph
Gene id: XLOC_011107
Gene Name: XLOC_011107
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-182
0.032
1
XLOC_012138
hsa-miR-324-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025860
Biotype: transcript isomorph
Gene id: XLOC_012138
Gene Name: XLOC_012138
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
698-714
0.032
0
RP4-738P15.1
hsa-miR-324-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000454676
Biotype: lincRNA
Gene id: ENSG00000230725
Gene Name: RP4-738P15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-367
0.025
1
7mer
448-470
0.003
0
7mer
400-420
0.002
0
6mer
2961-2980
0.002
0
RP11-154J22.1
hsa-miR-324-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612262
Biotype: antisense
Gene id: ENSG00000259488
Gene Name: RP11-154J22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3182-3194
0.019
0
8mer+wobble
3580-3602
0.010
3
6mer
3924-3943
0.003
3
RP11-45M22.3
hsa-miR-324-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584203
Biotype: antisense
Gene id: ENSG00000263624
Gene Name: RP11-45M22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
808-826
0.024
0
7mer
315-328
0.006
0
7mer
321-341
0.002
0
AF196970.3
hsa-miR-324-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000416061
Biotype: antisense
Gene id: ENSG00000232828
Gene Name: AF196970.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
713-738
0.014
7
7mer
160-172
0.006
0
6mer
603-620
0.004
7
6mer
143-162
0.003
0
6mer
8-21
0.002
1
6mer
13-34
0.002
1
RP11-434D2.3
hsa-miR-324-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591705
Biotype: lincRNA
Gene id: ENSG00000267075
Gene Name: RP11-434D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4157-4168
0.010
0
8mer
795-817
0.007
0
6mer
414-439
0.003
0
6mer
104-121
0.003
0
6mer
129-147
0.002
0
6mer
643-657
0.002
0
6mer
3573-3599
0.002
0
6mer
2498-2517
0.001
1
6mer
3721-3737
0.001
Not Conserved
6mer
2560-2576
0.001
1
XLOC_000811
hsa-miR-324-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002373
Biotype: transcript isomorph
Gene id: XLOC_000811
Gene Name: XLOC_000811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
24-43
0.031
2
AC009095.4
hsa-miR-324-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000388909
Biotype: antisense
Gene id: ENSG00000237718
Gene Name: AC009095.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-413
0.029
3
6mer
450-467
0.002
Not Conserved
XLOC_012583
hsa-miR-324-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025255
Biotype: transcript isomorph
Gene id: XLOC_012583
Gene Name: XLOC_012583
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-185
0.014
4
7mer
1168-1192
0.005
1
6mer
4-18
0.003
1
6mer
5021-5044
0.003
1
7mer
2209-2222
0.002
Not Conserved
6mer
3878-3893
0.002
3
7mer
2935-2948
0.001
1
6mer
895-915
0.001
0
SRRM2-AS1
hsa-miR-324-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577055
Biotype: antisense
Gene id: ENSG00000205913
Gene Name: SRRM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-98
0.029
1
6mer
624-646
0.002
0
LINC00035
hsa-miR-324-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026690.1
Biotype: lincRNA
Gene id: NR_026690.1 (gene)
Gene Name: LINC00035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-40
0.019
1
7mer
39-52
0.012
1
XLOC_011918
hsa-miR-324-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024630
Biotype: transcript isomorph
Gene id: XLOC_011918
Gene Name: XLOC_011918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3539-3556
0.016
0
6mer
104-130
0.004
0
6mer
2496-2512
0.004
0
6mer
3713-3738
0.003
0
6mer
830-850
0.002
Not Conserved
6mer
1013-1024
0.002
Not Conserved
6mer
884-904
0.001
Not Conserved
SRRM2-AS1
hsa-miR-324-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571305
Biotype: antisense
Gene id: ENSG00000205913
Gene Name: SRRM2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-71
0.031
1
XLOC_004412
hsa-miR-324-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010709
Biotype: transcript isomorph
Gene id: XLOC_004412
Gene Name: XLOC_004412
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-54
0.031
1
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