LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
CTD-2537I9.12
hsa-miR-324-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589456
Biotype: antisense
Gene id: ENSG00000267523
Gene Name: CTD-2537I9.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-88
0.012
0
7mer
151-164
0.011
1
7mer
48-63
0.008
1
6mer
369-393
0.002
1
AC005154.6
hsa-miR-324-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11046-11068
0.009
1
8mer
5127-5152
0.005
1
7mer
11140-11150
0.005
1
7mer
6504-6526
0.005
1
6mer
14518-14530
0.003
1
6mer
622-642
0.002
1
6mer
7669-7695
0.002
2
7mer
6318-6336
0.002
1
7mer
11121-11137
0.001
0
RP4-705D16.4
hsa-miR-324-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000613736
Biotype: lincRNA
Gene id: ENSG00000276905
Gene Name: RP4-705D16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
403-429
0.032
0
6mer
222-242
0.002
0
XLOC_004439
hsa-miR-324-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010003
Biotype: transcript isomorph
Gene id: XLOC_004439
Gene Name: XLOC_004439
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-147
0.034
1
HIPK1-AS1
hsa-miR-324-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450706
Biotype: antisense
Gene id: ENSG00000235527
Gene Name: HIPK1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
426-449
0.034
3
RP3-337H4.8
hsa-miR-324-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000417591
Biotype: antisense
Gene id: ENSG00000203362
Gene Name: RP3-337H4.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-357
0.021
0
7mer
665-684
0.012
3
AC005523.2
hsa-miR-324-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601192
Biotype: antisense
Gene id: ENSG00000269604
Gene Name: AC005523.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3178-3188
0.017
1
8mer
625-642
0.009
2
7mer
1643-1668
0.004
7
6mer
2545-2549
0.004
1
RP11-255G12.2
hsa-miR-324-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555649
Biotype: lincRNA
Gene id: ENSG00000258942
Gene Name: RP11-255G12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
428-447
0.034
1
XLOC_013288
hsa-miR-324-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026844
Biotype: transcript isomorph
Gene id: XLOC_013288
Gene Name: XLOC_013288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-314
0.022
0
7mer
620-639
0.010
0
6mer
545-558
0.002
0
XLOC_009913
hsa-miR-324-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020238
Biotype: transcript isomorph
Gene id: XLOC_009913
Gene Name: XLOC_009913
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
863-887
0.034
2
DGCR9
hsa-miR-324-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609630
Biotype: lincRNA
Gene id: ENSG00000273032
Gene Name: DGCR9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
632-646
0.015
0
8mer
1287-1305
0.010
0
7mer
1682-1708
0.005
0
6mer
2090-2114
0.004
0
RP11-785H5.2
hsa-miR-324-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543969
Biotype: sense_intronic
Gene id: ENSG00000256712
Gene Name: RP11-785H5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-172
0.019
1
7mer
88-103
0.014
1
XLOC_001612
hsa-miR-324-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002651
Biotype: transcript isomorph
Gene id: XLOC_001612
Gene Name: XLOC_001612
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-47
0.033
0
MIR137HG
hsa-miR-324-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413670
Biotype: lincRNA
Gene id: ENSG00000225206
Gene Name: MIR137HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1977-1995
0.029
5
6mer
1972-1995
0.004
5
CYP4F35P
hsa-miR-324-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582957
Biotype: lincRNA
Gene id: ENSG00000265787
Gene Name: CYP4F35P
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
976-997
0.024
0
6mer
2784-2803
0.008
0
6mer
231-248
0.002
Not Conserved
TMEM147-AS1
hsa-miR-324-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588286
Biotype: antisense
Gene id: ENSG00000236144
Gene Name: TMEM147-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-217
0.030
2
7mer
2162-2177
0.002
1
6mer
3661-3685
0.002
1
RP11-737O24.5
hsa-miR-324-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000608032
Biotype: antisense
Gene id: ENSG00000272625
Gene Name: RP11-737O24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-376
0.033
1
XLOC_000816
hsa-miR-324-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000513
Biotype: transcript isomorph
Gene id: XLOC_000816
Gene Name: XLOC_000816
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-509
0.025
1
7mer
193-214
0.006
0
6mer
670-694
0.002
0
AC007463.2
hsa-miR-324-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416534
Biotype: lincRNA
Gene id: ENSG00000226506
Gene Name: AC007463.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-102
0.030
1
6mer
158-171
0.003
Not Conserved
AC005616.1
hsa-miR-324-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589999
Biotype: lincRNA
Gene id: ENSG00000266893
Gene Name: AC005616.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-316
0.021
0
7mer
622-641
0.010
0
6mer
547-560
0.002
0
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