LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
CTD-2081C10.1
hsa-miR-324-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511953
Biotype: lincRNA
Gene id: ENSG00000250447
Gene Name: CTD-2081C10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-71
0.031
1
6mer
121-139
0.004
2
LINC01320
hsa-miR-324-3p
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607437
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
320-340
0.035
1
RP5-884M6.1
hsa-miR-324-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000490162
Biotype: lincRNA
Gene id: ENSG00000228742
Gene Name: RP5-884M6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
286-307
0.035
0
RP5-1142A6.8
hsa-miR-324-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567588
Biotype: antisense
Gene id: ENSG00000182376
Gene Name: RP5-1142A6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
561-581
0.022
1
8mer
72-90
0.012
Not Conserved
6mer
352-368
0.001
0
DSCAS
hsa-miR-324-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581836
Biotype: antisense
Gene id: ENSG00000265888
Gene Name: DSCAS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
321-341
0.031
4
6mer
390-404
0.004
3
LINC00661
hsa-miR-324-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000549354
Biotype: lincRNA
Gene id: ENSG00000205396
Gene Name: LINC00661
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
685-707
0.009
0
6mer
2997-3023
0.008
1
6mer
2755-2774
0.007
1
6mer
2303-2324
0.004
1
6mer
1551-1569
0.003
1
6mer
943-961
0.002
0
7mer
1567-1591
0.002
1
7mer
1585-1600
0.001
0
RP11-285G1.15
hsa-miR-324-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000602156
Biotype: processed_transcript
Gene id: ENSG00000277757
Gene Name: RP11-285G1.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
334-352
0.035
1
RP11-81H3.2
hsa-miR-324-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548427
Biotype: lincRNA
Gene id: ENSG00000251138
Gene Name: RP11-81H3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
803-821
0.031
1
6mer
255-278
0.004
0
RP11-661C8.2
hsa-miR-324-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507989
Biotype: lincRNA
Gene id: ENSG00000248949
Gene Name: RP11-661C8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
72-91
0.029
0
7mer
369-385
0.006
1
XLOC_000609
hsa-miR-324-3p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001324
Biotype: transcript isomorph
Gene id: XLOC_000609
Gene Name: XLOC_000609
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
385-411
0.021
1
7mer
26-37
0.009
0
6mer
164-189
0.005
1
AL592528.1
hsa-miR-324-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380008
Biotype: antisense
Gene id: ENSG00000205424
Gene Name: AL592528.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-438
0.007
0
7mer
3040-3062
0.007
1
7mer
2289-2302
0.006
0
8mer
2679-2701
0.005
0
6mer
3098-3111
0.003
0
7mer
463-488
0.002
0
6mer
2964-2987
0.002
0
7mer
1813-1825
0.001
0
6mer
2010-2031
0.001
0
6mer
2721-2741
0.001
Not Conserved
6mer
1962-1979
0.001
0
FAM95B1
hsa-miR-324-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592873
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1395-1417
0.013
0
7mer
378-397
0.008
0
6mer
4596-4615
0.003
Not Conserved
6mer
579-596
0.003
0
6mer
4535-4551
0.003
Not Conserved
6mer
4602-4628
0.003
Not Conserved
6mer
3647-3673
0.001
Not Conserved
6mer
2877-2901
0.001
Not Conserved
CTC-277H1.7
hsa-miR-324-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573063
Biotype: retained_intron
Gene id: ENSG00000262691
Gene Name: CTC-277H1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1695-1710
0.015
2
8mer
1530-1555
0.009
0
6mer
1929-1942
0.005
3
6mer
2147-2163
0.003
0
6mer
2328-2344
0.003
1
AC007277.3
hsa-miR-324-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423519
Biotype: antisense
Gene id: ENSG00000213981
Gene Name: AC007277.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1083
0.028
1
6mer
1111-1128
0.006
3
FAM95B1
hsa-miR-324-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000618309
Biotype: retained_intron
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1396-1418
0.013
0
7mer
379-398
0.008
0
6mer
4597-4616
0.003
Not Conserved
6mer
580-597
0.003
0
6mer
4536-4552
0.003
Not Conserved
6mer
4603-4629
0.002
Not Conserved
6mer
3648-3674
0.001
Not Conserved
6mer
2878-2902
0.001
Not Conserved
CTD-2537I9.12
hsa-miR-324-3p
0.810
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585940
Biotype: antisense
Gene id: ENSG00000267523
Gene Name: CTD-2537I9.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-77
0.012
0
7mer
140-153
0.011
1
7mer
37-52
0.009
1
6mer
358-382
0.002
1
KCNMA1-AS1
hsa-miR-324-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595702
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-481
0.032
0
6mer
376-396
0.002
1
RP3-418C23.2
hsa-miR-324-3p
0.808
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000574739
Biotype: lincRNA
Gene id: ENSG00000226684
Gene Name: RP3-418C23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
318-341
0.020
7
7mer
265-289
0.014
8
XLOC_014141
hsa-miR-324-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029497
Biotype: transcript isomorph
Gene id: XLOC_014141
Gene Name: XLOC_014141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-72
0.025
1
7mer
983-1007
0.006
1
6mer
572-580
0.003
1
RP4-607I7.1
hsa-miR-324-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528366
Biotype: antisense
Gene id: ENSG00000255521
Gene Name: RP4-607I7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-215
0.034
1
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