LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
RP11-379J5.5
hsa-miR-324-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428285
Biotype: antisense
Gene id: ENSG00000233993
Gene Name: RP11-379J5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-277
0.021
1
7mer
347-367
0.011
0
7mer
359-378
0.004
0
XLOC_012981
hsa-miR-324-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2092-2117
0.020
1
6mer
2832-2854
0.016
1
RP11-179K3.2
hsa-miR-324-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000425902
Biotype: lincRNA
Gene id: ENSG00000224714
Gene Name: RP11-179K3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-597
0.036
1
ALG1L9P
hsa-miR-324-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000508969
Biotype: processed_transcript
Gene id: ENSG00000248671
Gene Name: ALG1L9P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1440-1457
0.029
1
6mer
247-261
0.004
0
7mer
1732-1746
0.003
Not Conserved
XLOC_006664
hsa-miR-324-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014020
Biotype: transcript isomorph
Gene id: XLOC_006664
Gene Name: XLOC_006664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-130
0.036
1
OPCML-IT1
hsa-miR-324-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533859
Biotype: sense_intronic
Gene id: ENSG00000254896
Gene Name: OPCML-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2835-2854
0.035
1
6mer
1031-1048
0.001
2
XLOC_010017
hsa-miR-324-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020167
Biotype: transcript isomorph
Gene id: XLOC_010017
Gene Name: XLOC_010017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2044-2058
0.036
0
ITGA9-AS1
hsa-miR-324-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000439246
Biotype: retained_intron
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2743-2761
0.031
3
8mer+wobble
644-662
0.003
0
6mer
849-868
0.002
1
AC137932.5
hsa-miR-324-3p
0.822
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563087
Biotype: antisense
Gene id: ENSG00000260279
Gene Name: AC137932.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-161
0.036
0
RP11-66N24.6
hsa-miR-324-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000610501
Biotype: lincRNA
Gene id: ENSG00000274002
Gene Name: RP11-66N24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-301
0.036
1
GTF3C2-AS1
hsa-miR-324-3p
0.821
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590754
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-103
0.036
7
DOCK4-AS1
hsa-miR-324-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452714
Biotype: antisense
Gene id: ENSG00000225572
Gene Name: DOCK4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2415-2435
0.020
Not Conserved
8mer
1319-1333
0.013
3
6mer
1330-1344
0.001
1
6mer
947-974
0.001
1
ZMYND10-AS1
hsa-miR-324-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000440013
Biotype: antisense
Gene id: ENSG00000235058
Gene Name: ZMYND10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-119
0.035
5
XLOC_014114
hsa-miR-324-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029175
Biotype: transcript isomorph
Gene id: XLOC_014114
Gene Name: XLOC_014114
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
880-904
0.024
0
7mer
470-496
0.011
0
XLOC_000917
hsa-miR-324-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001584
Biotype: transcript isomorph
Gene id: XLOC_000917
Gene Name: XLOC_000917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
370-386
0.014
1
6mer
1397-1423
0.006
7
6mer
422-442
0.006
3
6mer
1523-1544
0.004
3
6mer
1748-1768
0.003
4
6mer
764-785
0.002
0
RP11-56N19.5
hsa-miR-324-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000376620
Biotype: antisense
Gene id: ENSG00000177553
Gene Name: RP11-56N19.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
718-735
0.011
1
7mer
1210-1228
0.009
2
7mer
1467-1482
0.008
0
7mer
142-166
0.008
1
RP5-1100I6.1
hsa-miR-324-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457224
Biotype: lincRNA
Gene id: ENSG00000236151
Gene Name: RP5-1100I6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-453
0.035
1
LINC00601
hsa-miR-324-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456514
Biotype: lincRNA
Gene id: ENSG00000235180
Gene Name: LINC00601
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1121-1135
0.020
1
7mer
713-725
0.015
2
SNHG15
hsa-miR-324-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000580528
Biotype: lincRNA
Gene id: ENSG00000232956
Gene Name: SNHG15
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1007-1025
0.028
1
6mer
383-396
0.005
0
6mer
695-715
0.002
0
RP11-379J5.5
hsa-miR-324-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109955.1
Biotype: antisense
Gene id: NR_109955.1 (gene)
Gene Name: RP11-379J5.5
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
258-277
0.021
1
7mer
347-367
0.010
0
7mer
359-378
0.004
0
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