LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
MIR4313
hsa-miR-324-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561777
Biotype: lincRNA
Gene id: ENSG00000261043
Gene Name: MIR4313
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
824-847
0.036
1
7mer
886-905
0.003
Not Conserved
RP11-143A12.3
hsa-miR-324-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506655
Biotype: lincRNA
Gene id: ENSG00000250198
Gene Name: RP11-143A12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-449
0.029
1
7mer
2255-2270
0.005
0
6mer
12-31
0.005
1
RP11-352G18.2
hsa-miR-324-3p
0.854
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565993
Biotype: antisense
Gene id: ENSG00000260773
Gene Name: RP11-352G18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-128
0.040
2
GSN-AS1
hsa-miR-324-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000414544
Biotype: antisense
Gene id: ENSG00000235865
Gene Name: GSN-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4512-4534
0.034
3
7mer
2181-2202
0.004
2
6mer
1925-1948
0.002
2
TIPARP-AS1
hsa-miR-324-3p
0.853
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463449
Biotype: antisense
Gene id: ENSG00000243926
Gene Name: TIPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-128
0.039
1
AC007563.1
hsa-miR-324-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418591
Biotype: lincRNA
Gene id: ENSG00000236295
Gene Name: AC007563.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
195-218
0.037
1
6mer
1599-1621
0.002
1
CTA-246H3.12
hsa-miR-324-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609330
Biotype: lincRNA
Gene id: ENSG00000272942
Gene Name: CTA-246H3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
667-683
0.026
0
6mer
450-469
0.013
0
XLOC_004901
hsa-miR-324-3p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010966
Biotype: transcript isomorph
Gene id: XLOC_004901
Gene Name: XLOC_004901
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
626-652
0.026
0
6mer
820-843
0.008
2
6mer
979-994
0.005
1
LOC100505812
hsa-miR-324-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_040599.1
Biotype: sense
Gene id: NR_040599.1 (gene)
Gene Name: LOC100505812
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-460
0.039
1
RP11-47A8.5
hsa-miR-324-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000607967
Biotype: lincRNA
Gene id: ENSG00000272933
Gene Name: RP11-47A8.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1148-1164
0.029
7
7mer
17-32
0.005
5
6mer
264-278
0.003
1
7mer
1258-1278
0.002
Not Conserved
CTC-241F20.3
hsa-miR-324-3p
0.849
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602172
Biotype: antisense
Gene id: ENSG00000268001
Gene Name: CTC-241F20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-460
0.039
1
XLOC_009990
hsa-miR-324-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020685
Biotype: transcript isomorph
Gene id: XLOC_009990
Gene Name: XLOC_009990
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
978-1001
0.039
1
XLOC_006993
hsa-miR-324-3p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015403
Biotype: transcript isomorph
Gene id: XLOC_006993
Gene Name: XLOC_006993
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-312
0.032
0
8mer+wobble
252-274
0.005
0
6mer
69-92
0.002
1
TTTY12
hsa-miR-324-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000413466
Biotype: lincRNA
Gene id: ENSG00000237048
Gene Name: TTTY12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-75
0.021
0
6mer
702-722
0.018
0
TIPARP-AS1
hsa-miR-324-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492937
Biotype: antisense
Gene id: ENSG00000243926
Gene Name: TIPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-188
0.039
1
RP11-923I11.4
hsa-miR-324-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567167
Biotype: lincRNA
Gene id: ENSG00000260473
Gene Name: RP11-923I11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
985-1004
0.039
2
XLOC_008283
hsa-miR-324-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017573
Biotype: transcript isomorph
Gene id: XLOC_008283
Gene Name: XLOC_008283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-75
0.021
0
6mer
702-722
0.018
0
TIPARP-AS1
hsa-miR-324-3p
0.847
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000478005
Biotype: antisense
Gene id: ENSG00000243926
Gene Name: TIPARP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-186
0.039
1
FZD10-AS1
hsa-miR-324-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000505807
Biotype: lincRNA
Gene id: ENSG00000250208
Gene Name: FZD10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1011-1030
0.018
Not Conserved
8mer
1177-1196
0.005
0
8mer
9285-9309
0.005
0
8mer
7106-7127
0.003
1
6mer
10146-10168
0.002
0
6mer
134-160
0.002
0
7mer
7734-7748
0.002
0
8mer+mismatch
5517-5539
0.001
1
6mer
4273-4296
0.001
1
XLOC_000352
hsa-miR-324-3p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000279
Biotype: transcript isomorph
Gene id: XLOC_000352
Gene Name: XLOC_000352
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-258
0.039
0
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