LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012387
hsa-miR-324-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025558
Biotype: transcript isomorph
Gene id: XLOC_012387
Gene Name: XLOC_012387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
779-796
0.023
1
7mer
1527-1550
0.009
0
8mer
556-579
0.008
0
6mer
828-846
0.002
2
LINC01320
hsa-miR-324-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000616475
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
109-129
0.042
1
DHRS4-AS1
hsa-miR-324-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555045
Biotype: antisense
Gene id: ENSG00000215256
Gene Name: DHRS4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-361
0.041
1
XLOC_006079
hsa-miR-324-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013003
Biotype: transcript isomorph
Gene id: XLOC_006079
Gene Name: XLOC_006079
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2439-2456
0.032
1
6mer
1058-1077
0.004
1
6mer
840-863
0.003
1
6mer
1339-1365
0.002
0
CTD-2515H24.2
hsa-miR-324-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621477
Biotype: lincRNA
Gene id: ENSG00000276772
Gene Name: CTD-2515H24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126-144
0.037
2
6mer
168-189
0.004
1
RP11-431K24.1
hsa-miR-324-3p
0.865
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445300
Biotype: lincRNA
Gene id: ENSG00000238290
Gene Name: RP11-431K24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
80-99
0.016
1
9mer
1859-1886
0.016
0
6mer
848-866
0.004
6
8mer+wobble
1668-1680
0.004
Not Conserved
RP11-5N11.6
hsa-miR-324-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509629
Biotype: lincRNA
Gene id: ENSG00000250164
Gene Name: RP11-5N11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-205
0.041
1
RP4-671O14.7
hsa-miR-324-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15855-15879
0.010
1
8mer
1571-1585
0.007
0
8mer
2224-2240
0.004
1
7mer
10963-10982
0.002
0
7mer
2165-2182
0.002
1
6mer
16817-16841
0.002
2
7mer
15521-15539
0.002
0
6mer
10255-10266
0.002
1
6mer
13054-13075
0.002
0
6mer
12435-12460
0.002
1
7mer
11770-11793
0.001
1
6mer
12334-12346
0.001
1
6mer
15000-15025
0.001
1
6mer
14714-14736
0.001
0
7mer
15814-15827
0.001
0
6mer
15379-15397
0.001
1
RP11-284F21.9
hsa-miR-324-3p
0.864
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606343
Biotype: lincRNA
Gene id: ENSG00000272068
Gene Name: RP11-284F21.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-138
0.035
1
7mer
493-516
0.006
Not Conserved
CTB-83J4.1
hsa-miR-324-3p
0.863
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601161
Biotype: lincRNA
Gene id: ENSG00000269524
Gene Name: CTB-83J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
139-157
0.041
1
XLOC_002882
hsa-miR-324-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006281
Biotype: transcript isomorph
Gene id: XLOC_002882
Gene Name: XLOC_002882
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1033-1048
0.032
3
6mer
6334-6356
0.004
0
6mer
1949-1959
0.002
2
7mer
4468-4493
0.002
0
CTB-55O6.12
hsa-miR-324-3p
0.861
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588387
Biotype: antisense
Gene id: ENSG00000267169
Gene Name: CTB-55O6.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2601-2622
0.021
Not Conserved
8mer
2475-2502
0.011
1
8mer
1789-1806
0.005
1
6mer
1428-1440
0.002
3
6mer
1959-1984
0.001
1
RP11-1036E20.9
hsa-miR-324-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000399003
Biotype: lincRNA
Gene id: ENSG00000214797
Gene Name: RP11-1036E20.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-424
0.029
0
7mer
596-618
0.011
1
RP1-155D22.2
hsa-miR-324-3p
0.860
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564697
Biotype: lincRNA
Gene id: ENSG00000260422
Gene Name: RP1-155D22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-66
0.033
0
6mer
1552-1576
0.005
3
6mer
1602-1628
0.003
1
U73166.2
hsa-miR-324-3p
0.858
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000439898
Biotype: lincRNA
Gene id: ENSG00000230454
Gene Name: U73166.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2410-2435
0.035
0
6mer
487-514
0.003
4
7mer
523-540
0.002
1
C1QTNF3-AMACR
hsa-miR-324-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_037951.1
Biotype: sense
Gene id: NR_037951.1 (gene)
Gene Name: C1QTNF3-AMACR
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-170
0.019
1
7mer
379-405
0.015
0
7mer
3287-3306
0.006
4
CTD-2517M22.14
hsa-miR-324-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000569326
Biotype: retained_intron
Gene id: ENSG00000255182
Gene Name: CTD-2517M22.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
757-782
0.019
5
6mer
3294-3312
0.003
4
7mer
2961-2986
0.003
1
6mer
1076-1100
0.003
8
6mer
3283-3302
0.003
3
6mer
239-263
0.002
0
7mer
1739-1760
0.002
1
6mer
423-439
0.001
1
7mer
637-652
0.001
0
7mer
627-644
0.001
1
H19
hsa-miR-324-3p
0.857
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000439725
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1760-1773
0.010
0
7mer
1749-1773
0.007
0
6mer
1431-1447
0.006
5
7mer
1497-1513
0.005
0
6mer
1894-1909
0.005
3
6mer
1870-1895
0.004
2
6mer
1652-1675
0.002
1
XLOC_011532
hsa-miR-324-3p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023741
Biotype: transcript isomorph
Gene id: XLOC_011532
Gene Name: XLOC_011532
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-405
0.033
1
8mer
325-342
0.007
0
RP11-74E22.8
hsa-miR-324-3p
0.855
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000614400
Biotype: lincRNA
Gene id: ENSG00000277200
Gene Name: RP11-74E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-277
0.021
1
8mer
970-977
0.008
0
8mer
1979-1994
0.005
2
6mer
146-166
0.002
4
7mer
425-442
0.002
1
6mer
2252-2269
0.002
1
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