LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-324-3p


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Gene
miRNA
Score
DIANA Links
CTA-280A3.1
hsa-miR-324-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623467
Biotype: lincRNA
Gene id: ENSG00000279888
Gene Name: CTA-280A3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
823-838
0.033
0
7mer
770-793
0.010
0
FLJ16779
hsa-miR-324-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000612722
Biotype: antisense
Gene id: ENSG00000275620
Gene Name: FLJ16779
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2798-2818
0.011
0
7mer
6945-6963
0.008
0
7mer
7205-7225
0.006
1
7mer
1361-1384
0.003
1
7mer
5089-5106
0.003
1
7mer
5659-5681
0.002
1
7mer
3075-3097
0.002
0
6mer
5483-5506
0.001
2
7mer
5656-5673
0.001
1
6mer
4029-4055
0.001
1
7mer
3093-3117
0.001
0
6mer
1213-1228
0.001
1
6mer
4624-4642
0.001
1
7mer
3155-3177
0.001
0
7mer
3205-3217
0.001
Not Conserved
6mer
1440-1453
0.000
1
6mer
1388-1405
0.000
0
AC007308.6
hsa-miR-324-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000430719
Biotype: antisense
Gene id: ENSG00000234252
Gene Name: AC007308.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-691
0.026
0
6mer
1698-1723
0.009
2
7mer
1482-1502
0.006
1
6mer
1759-1774
0.001
0
RP11-94L15.2
hsa-miR-324-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
696-710
0.036
4
8mer
4237-4260
0.003
Not Conserved
6mer
1051-1061
0.002
2
6mer
4495-4508
0.001
2
CTD-3220F14.1
hsa-miR-324-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000612804
Biotype: lincRNA
Gene id: ENSG00000267605
Gene Name: CTD-3220F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
799-822
0.025
0
7mer
2028-2053
0.015
1
6mer
1579-1598
0.003
0
RP11-661P17.1
hsa-miR-324-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_110106.1
Biotype: lincRNA
Gene id: NR_110106.1 (gene)
Gene Name: RP11-661P17.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1943-1969
0.042
0
RP11-166D19.1
hsa-miR-324-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529823
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2995-3019
0.037
11
7mer
825-840
0.005
0
XLOC_010579
hsa-miR-324-3p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022264
Biotype: transcript isomorph
Gene id: XLOC_010579
Gene Name: XLOC_010579
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
195-216
0.042
0
XLOC_011660
hsa-miR-324-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024814
Biotype: transcript isomorph
Gene id: XLOC_011660
Gene Name: XLOC_011660
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
128-147
0.031
4
7mer
16-37
0.011
3
RP11-179B15.6
hsa-miR-324-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000562575
Biotype: lincRNA
Gene id: ENSG00000261076
Gene Name: RP11-179B15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1244-1260
0.028
1
8mer
617-627
0.010
1
6mer
124-144
0.004
Not Conserved
AC008079.10
hsa-miR-324-3p
0.872
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4499-4521
0.010
0
6mer
20307-20330
0.008
8
8mer
3499-3514
0.004
1
7mer
17757-17778
0.003
0
8mer
9230-9250
0.002
1
7mer
811-825
0.002
1
6mer
3612-3629
0.002
2
7mer
9125-9147
0.001
1
6mer
17182-17197
0.001
0
8mer
8859-8877
0.001
0
6mer
13060-13077
0.001
0
6mer
7081-7107
0.001
1
6mer
11303-11315
0.001
1
6mer
18243-18262
0.001
0
6mer
9021-9031
0.001
2
6mer
4462-4486
0.001
0
6mer
2545-2562
0.001
0
6mer
4399-4423
0.000
4
XLOC_009217
hsa-miR-324-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019151
Biotype: transcript isomorph
Gene id: XLOC_009217
Gene Name: XLOC_009217
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-263
0.039
Not Conserved
6mer
1132-1154
0.002
Not Conserved
RP11-885N19.6
hsa-miR-324-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428088
Biotype: lincRNA
Gene id: ENSG00000237419
Gene Name: RP11-885N19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
474-500
0.042
0
LINC01320
hsa-miR-324-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603129
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
97-117
0.042
1
LINC00881
hsa-miR-324-3p
0.871
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000471719
Biotype: lincRNA
Gene id: ENSG00000241135
Gene Name: LINC00881
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-377
0.033
1
7mer
572-587
0.008
0
XLOC_010971
hsa-miR-324-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023071
Biotype: transcript isomorph
Gene id: XLOC_010971
Gene Name: XLOC_010971
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1411-1435
0.016
0
8mer
1309-1329
0.014
2
8mer
1925-1948
0.006
0
8mer
1146-1170
0.004
Not Conserved
6mer
731-754
0.002
Not Conserved
RP11-982M15.8
hsa-miR-324-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000564585
Biotype: lincRNA
Gene id: ENSG00000260792
Gene Name: RP11-982M15.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-271
0.035
1
6mer
270-294
0.005
0
6mer
3119-3141
0.002
Not Conserved
RP11-166D19.1
hsa-miR-324-3p
0.870
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3019-3043
0.037
11
7mer
828-843
0.005
0
XLOC_011484
hsa-miR-324-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2111-2130
0.034
0
6mer
2396-2417
0.008
0
AC005307.1
hsa-miR-324-3p
0.869
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000567877
Biotype: lincRNA
Gene id: ENSG00000260725
Gene Name: AC005307.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-324-3p
Sequence: acugccccaggugcugcugg
MirBase ID: MIMAT0000762
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
57-81
0.031
0
6mer
150-175
0.006
1
7mer
873-893
0.005
1
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