LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29c-3p


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Gene
miRNA
Score
DIANA Links
RP11-98C1.2
hsa-miR-29c-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591103
Biotype: antisense
Gene id: ENSG00000272895
Gene Name: RP11-98C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-367
0.025
2
XLOC_000914
hsa-miR-29c-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001578
Biotype: transcript isomorph
Gene id: XLOC_000914
Gene Name: XLOC_000914
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-536
0.019
1
7mer
589-612
0.006
0
HCG24
hsa-miR-29c-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000414398
Biotype: antisense
Gene id: ENSG00000230313
Gene Name: HCG24
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-46
0.025
1
RP5-944M2.3
hsa-miR-29c-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540774
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
857-882
0.011
1
8mer
220-243
0.011
0
6mer
151-178
0.003
0
RP11-634B7.4
hsa-miR-29c-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449298
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-372
0.022
0
6mer
624-636
0.003
0
RP11-81H14.2
hsa-miR-29c-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542875
Biotype: lincRNA
Gene id: ENSG00000251301
Gene Name: RP11-81H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
516-533
0.017
5
7mer
452-463
0.008
1
MAMDC2-AS1
hsa-miR-29c-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448377
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-130
0.021
0
6mer
388-400
0.004
1
LINC01251
hsa-miR-29c-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000422764
Biotype: antisense
Gene id: ENSG00000233776
Gene Name: LINC01251
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-32
0.025
3
FAS-AS1
hsa-miR-29c-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_028371.1
Biotype: antisense
Gene id: NR_028371.1 (gene)
Gene Name: FAS-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1056-1074
0.020
2
6mer
35-59
0.005
0
RP11-680F20.6
hsa-miR-29c-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531193
Biotype: antisense
Gene id: ENSG00000254967
Gene Name: RP11-680F20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
728-749
0.025
0
LINC01251
hsa-miR-29c-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444956
Biotype: antisense
Gene id: ENSG00000233776
Gene Name: LINC01251
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-32
0.025
3
RP11-196G18.3
hsa-miR-29c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000428289
Biotype: antisense
Gene id: ENSG00000233030
Gene Name: RP11-196G18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-196
0.019
1
6mer
128-141
0.003
1
6mer
1179-1191
0.002
0
RP11-326I11.5
hsa-miR-29c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605082
Biotype: sense_intronic
Gene id: ENSG00000270426
Gene Name: RP11-326I11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-492
0.025
6
XLOC_004067
hsa-miR-29c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008571
Biotype: transcript isomorph
Gene id: XLOC_004067
Gene Name: XLOC_004067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
453-466
0.025
1
XLOC_007119
hsa-miR-29c-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015038
Biotype: transcript isomorph
Gene id: XLOC_007119
Gene Name: XLOC_007119
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1455-1474
0.025
1
XLOC_002244
hsa-miR-29c-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004364
Biotype: transcript isomorph
Gene id: XLOC_002244
Gene Name: XLOC_002244
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
878-903
0.025
0
SNHG14
hsa-miR-29c-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2651-2667
0.009
1
7mer
413-435
0.007
1
6mer
167-187
0.004
1
6mer
1255-1281
0.003
2
6mer
1070-1092
0.001
0
AC058791.1
hsa-miR-29c-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_034120.1
Biotype: lincRNA
Gene id: NR_034120.1 (gene)
Gene Name: AC058791.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1734-1747
0.025
1
RP11-299H22.1
hsa-miR-29c-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559985
Biotype: lincRNA
Gene id: ENSG00000259697
Gene Name: RP11-299H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-376
0.025
Not Conserved
LL22NC03-22D1.1
hsa-miR-29c-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7821-7838
0.010
1
8mer
10229-10246
0.004
0
7mer
14776-14793
0.003
1
6mer
916-932
0.003
1
6mer
13458-13463
0.002
4
6mer
13322-13337
0.002
0
6mer
10791-10809
0.001
2
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