LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29c-3p


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Gene
miRNA
Score
DIANA Links
RP3-513G18.2
hsa-miR-29c-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508619
Biotype: lincRNA
Gene id: ENSG00000250632
Gene Name: RP3-513G18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
528-554
0.020
0
6mer
452-474
0.003
0
6mer
961-982
0.002
Not Conserved
XLOC_003861
hsa-miR-29c-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007369
Biotype: transcript isomorph
Gene id: XLOC_003861
Gene Name: XLOC_003861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-553
0.020
0
6mer
451-473
0.003
0
6mer
960-981
0.002
Not Conserved
RP13-60M5.2
hsa-miR-29c-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000544644
Biotype: lincRNA
Gene id: ENSG00000228189
Gene Name: RP13-60M5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-452
0.026
0
AL133493.2
hsa-miR-29c-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441095
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-284
0.014
2
8mer
3808-3828
0.008
1
7mer
3912-3930
0.002
0
6mer
391-414
0.002
0
XLOC_013437
hsa-miR-29c-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028093
Biotype: transcript isomorph
Gene id: XLOC_013437
Gene Name: XLOC_013437
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1916-1938
0.026
0
RP1-101G11.3
hsa-miR-29c-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9633-9654
0.012
1
7mer
2412-2428
0.006
0
7mer
9562-9584
0.004
1
6mer
5484-5504
0.002
1
6mer
2050-2072
0.001
1
6mer
6727-6749
0.001
Not Conserved
AC073254.1
hsa-miR-29c-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597495
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-114
0.025
2
LINC00663
hsa-miR-29c-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586645
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
445-470
0.019
0
7mer
416-433
0.007
0
RP3-416J7.5
hsa-miR-29c-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000381078
Biotype: lincRNA
Gene id: ENSG00000205653
Gene Name: RP3-416J7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1861-1874
0.025
1
RP11-804H8.6
hsa-miR-29c-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608605
Biotype: lincRNA
Gene id: ENSG00000273356
Gene Name: RP11-804H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-229
0.021
1
6mer
291-310
0.003
2
6mer
1059-1079
0.002
0
RP11-392O17.1
hsa-miR-29c-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441790
Biotype: lincRNA
Gene id: ENSG00000228536
Gene Name: RP11-392O17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-146
0.025
2
XLOC_003125
hsa-miR-29c-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006511
Biotype: transcript isomorph
Gene id: XLOC_003125
Gene Name: XLOC_003125
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-754
0.019
0
6mer
100-124
0.004
0
6mer
382-399
0.002
0
RP11-108P20.2
hsa-miR-29c-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586383
Biotype: lincRNA
Gene id: ENSG00000267501
Gene Name: RP11-108P20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-232
0.013
0
8mer
281-299
0.013
1
XLOC_003546
hsa-miR-29c-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007535
Biotype: transcript isomorph
Gene id: XLOC_003546
Gene Name: XLOC_003546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-141
0.018
1
6mer
2769-2787
0.004
1
7mer
1788-1805
0.004
1
LINC01320
hsa-miR-29c-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603129
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-287
0.025
2
XLOC_005730
hsa-miR-29c-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011216
Biotype: transcript isomorph
Gene id: XLOC_005730
Gene Name: XLOC_005730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1290-1304
0.018
1
6mer
53-80
0.004
1
6mer
1006-1029
0.003
2
LOC646719
hsa-miR-29c-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_046262.1
Biotype: lincRNA
Gene id: NR_046262.1 (gene)
Gene Name: LOC646719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
639-658
0.024
1
6mer
3959-3974
0.001
0
RP4-761J14.8
hsa-miR-29c-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000396799
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1075-1102
0.018
10
6mer
1072-1085
0.007
11
RP11-116D17.1
hsa-miR-29c-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547948
Biotype: lincRNA
Gene id: ENSG00000257726
Gene Name: RP11-116D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-29
0.022
1
6mer
197-218
0.003
0
XLOC_003240
hsa-miR-29c-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006650
Biotype: transcript isomorph
Gene id: XLOC_003240
Gene Name: XLOC_003240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8352-8375
0.006
2
8mer
3213-3222
0.005
0
6mer
8421-8432
0.004
4
6mer
8160-8184
0.003
2
7mer
3433-3449
0.003
0
6mer
2369-2387
0.002
0
6mer
6898-6919
0.001
Not Conserved
6mer
5248-5266
0.001
0
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