LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-29c-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
CTD-2085J24.3
hsa-miR-29c-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590069
Biotype: antisense
Gene id: ENSG00000267555
Gene Name: CTD-2085J24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-197
0.027
1
XLOC_003405
hsa-miR-29c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006771
Biotype: transcript isomorph
Gene id: XLOC_003405
Gene Name: XLOC_003405
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8875-8895
0.013
1
7mer
458-484
0.005
0
8mer
8372-8393
0.004
0
6mer
9341-9364
0.002
0
6mer
8262-8287
0.001
1
6mer
1617-1643
0.001
Not Conserved
6mer
8316-8338
0.001
0
LINC01001
hsa-miR-29c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527683
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
631-646
0.014
0
6mer
126-145
0.009
1
6mer
43-61
0.004
0
RP11-849F2.4
hsa-miR-29c-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585275
Biotype: lincRNA
Gene id: ENSG00000266279
Gene Name: RP11-849F2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-144
0.027
3
FLJ46066
hsa-miR-29c-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_040105.1
Biotype: lincRNA
Gene id: NR_040105.1 (gene)
Gene Name: FLJ46066
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1760-1786
0.027
0
SLX1A-SULT1A3
hsa-miR-29c-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037608.1
Biotype: sense
Gene id: NR_037608.1 (gene)
Gene Name: SLX1A-SULT1A3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-318
0.027
7
FLJ46066
hsa-miR-29c-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496220
Biotype: lincRNA
Gene id: ENSG00000241098
Gene Name: FLJ46066
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1760-1786
0.027
0
AC002480.2
hsa-miR-29c-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000414116
Biotype: lincRNA
Gene id: ENSG00000238033
Gene Name: AC002480.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2377-2394
0.022
1
6mer
294-313
0.004
1
AC009961.3
hsa-miR-29c-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607836
Biotype: lincRNA
Gene id: ENSG00000226266
Gene Name: AC009961.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2455-2469
0.017
8
7mer
40-54
0.009
0
RP11-930O11.1
hsa-miR-29c-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000560924
Biotype: lincRNA
Gene id: ENSG00000259719
Gene Name: RP11-930O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-102
0.024
5
6mer
255-274
0.003
0
RP5-998N21.4
hsa-miR-29c-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415338
Biotype: lincRNA
Gene id: ENSG00000234571
Gene Name: RP5-998N21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-196
0.020
1
6mer
128-141
0.004
1
6mer
1178-1190
0.003
0
RP4-738P15.1
hsa-miR-29c-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000454676
Biotype: lincRNA
Gene id: ENSG00000230725
Gene Name: RP4-738P15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-153
0.010
0
7mer
181-204
0.005
1
7mer
1567-1592
0.005
0
6mer
615-633
0.003
1
6mer
396-414
0.003
0
RP11-344E13.3
hsa-miR-29c-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580056
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-378
0.027
1
XLOC_002997
hsa-miR-29c-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006381
Biotype: transcript isomorph
Gene id: XLOC_002997
Gene Name: XLOC_002997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-420
0.014
2
8mer
393-408
0.013
1
TTTY15
hsa-miR-29c-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000457658
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-208
0.026
0
RP11-387D10.4
hsa-miR-29c-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621212
Biotype: lincRNA
Gene id: ENSG00000278370
Gene Name: RP11-387D10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
302-327
0.013
0
7mer
159-185
0.013
0
LINC01320
hsa-miR-29c-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000616475
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-299
0.026
2
RP11-2H8.2
hsa-miR-29c-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552780
Biotype: lincRNA
Gene id: ENSG00000257410
Gene Name: RP11-2H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1137-1162
0.026
2
RP11-91K9.1
hsa-miR-29c-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436078
Biotype: lincRNA
Gene id: ENSG00000231574
Gene Name: RP11-91K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2742-2758
0.026
0
RP5-991G20.1
hsa-miR-29c-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563328
Biotype: antisense
Gene id: ENSG00000259768
Gene Name: RP5-991G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
733-750
0.015
9
6mer
536-555
0.006
10
6mer
770-793
0.005
11
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept