LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-29c-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_010109
hsa-miR-29c-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020821
Biotype: transcript isomorph
Gene id: XLOC_010109
Gene Name: XLOC_010109
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-277
0.015
2
8mer
1108-1127
0.014
0
FAM95B1
hsa-miR-29c-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455995
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
504-523
0.018
1
7mer
4147-4170
0.006
Not Conserved
8mer
1771-1789
0.003
Not Conserved
6mer
3250-3265
0.002
Not Conserved
6mer
2013-2036
0.001
0
RP11-161M6.2
hsa-miR-29c-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562570
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-166
0.026
1
6mer
612-631
0.002
0
6mer
1747-1768
0.001
Not Conserved
XLOC_002618
hsa-miR-29c-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005993
Biotype: transcript isomorph
Gene id: XLOC_002618
Gene Name: XLOC_002618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-677
0.016
0
7mer
439-451
0.013
2
LINC01002
hsa-miR-29c-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616693
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-345
0.024
1
6mer
51-70
0.005
0
C21orf128
hsa-miR-29c-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000329015
Biotype: sense_overlapping
Gene id: ENSG00000184385
Gene Name: C21orf128
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-590
0.010
0
7mer
1923-1940
0.008
1
8mer
1650-1666
0.008
0
6mer
1281-1303
0.003
4
AC006115.3
hsa-miR-29c-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597946
Biotype: antisense
Gene id: ENSG00000269793
Gene Name: AC006115.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-75
0.029
1
FAM95B1
hsa-miR-29c-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000620585
Biotype: retained_intron
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-524
0.017
1
7mer
4148-4171
0.006
Not Conserved
8mer
1772-1790
0.003
Not Conserved
6mer
3251-3266
0.002
Not Conserved
6mer
2014-2037
0.001
0
RP11-678G14.3
hsa-miR-29c-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596996
Biotype: lincRNA
Gene id: ENSG00000268555
Gene Name: RP11-678G14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-275
0.029
1
RP4-563E14.1
hsa-miR-29c-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000619319
Biotype: lincRNA
Gene id: ENSG00000273759
Gene Name: RP4-563E14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-138
0.024
1
7mer
515-540
0.005
0
NPPA-AS1
hsa-miR-29c-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000400892
Biotype: antisense
Gene id: ENSG00000242349
Gene Name: NPPA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-397
0.029
5
LINC00841
hsa-miR-29c-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451929
Biotype: lincRNA
Gene id: ENSG00000233395
Gene Name: LINC00841
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2038-2061
0.029
Not Conserved
MIAT
hsa-miR-29c-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8351-8374
0.013
Not Conserved
7mer
5612-5637
0.005
5
7mer
7979-8003
0.003
0
6mer
790-815
0.003
2
6mer
4321-4342
0.002
3
6mer
3455-3474
0.001
1
6mer
3734-3749
0.001
1
6mer
4660-4683
0.001
1
RP11-575L7.2
hsa-miR-29c-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412069
Biotype: antisense
Gene id: ENSG00000226877
Gene Name: RP11-575L7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-229
0.029
6
LINC01090
hsa-miR-29c-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415357
Biotype: lincRNA
Gene id: ENSG00000231689
Gene Name: LINC01090
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-466
0.029
1
LINC00113
hsa-miR-29c-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000425376
Biotype: lincRNA
Gene id: ENSG00000225298
Gene Name: LINC00113
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-497
0.024
1
6mer
341-352
0.004
0
C21orf15
hsa-miR-29c-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026755.1
Biotype: lincRNA
Gene id: NR_026755.1 (gene)
Gene Name: C21orf15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
976-1000
0.015
0
7mer
66-89
0.014
0
RP11-57H14.4
hsa-miR-29c-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564352
Biotype: sense_overlapping
Gene id: ENSG00000260917
Gene Name: RP11-57H14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
725-748
0.024
1
6mer
310-335
0.003
1
6mer
2897-2920
0.002
1
GMDS-AS1
hsa-miR-29c-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000534441
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
575-597
0.029
Not Conserved
CTD-2201E18.3
hsa-miR-29c-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503152
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-418
0.029
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept