LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-29c-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
HTT-AS
hsa-miR-29c-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503893
Biotype: antisense
Gene id: ENSG00000251075
Gene Name: HTT-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-180
0.027
1
6mer
43-65
0.004
0
LINC00969
hsa-miR-29c-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600197
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-630
0.015
2
8mer
603-618
0.011
1
6mer
785-806
0.004
3
RP11-706O15.1
hsa-miR-29c-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000483854
Biotype: lincRNA
Gene id: ENSG00000205664
Gene Name: RP11-706O15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
509-530
0.030
0
LOC100507346
hsa-miR-29c-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_038982.1
Biotype: antisense
Gene id: NR_038982.1 (gene)
Gene Name: LOC100507346
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1124-1144
0.022
2
7mer
811-828
0.008
8
RP11-374M1.2
hsa-miR-29c-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
519-533
0.030
1
XLOC_012073
hsa-miR-29c-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025268
Biotype: transcript isomorph
Gene id: XLOC_012073
Gene Name: XLOC_012073
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-236
0.020
0
8mer
122-148
0.010
0
CTA-414D7.1
hsa-miR-29c-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
148-163
0.012
1
7mer
6355-6373
0.005
0
6mer
13239-13243
0.005
0
6mer
94-115
0.003
1
6mer
6688-6710
0.002
1
6mer
8922-8937
0.001
1
6mer
4976-5000
0.001
0
6mer
3477-3493
0.001
1
AC093639.1
hsa-miR-29c-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441026
Biotype: lincRNA
Gene id: ENSG00000234172
Gene Name: AC093639.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-446
0.030
1
MIAT
hsa-miR-29c-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620145
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8477-8500
0.014
Not Conserved
7mer
5738-5763
0.005
5
7mer
8105-8129
0.003
0
6mer
790-815
0.003
2
6mer
4447-4468
0.002
3
6mer
3581-3600
0.001
1
6mer
3860-3875
0.001
1
6mer
4786-4809
0.001
1
MIAT
hsa-miR-29c-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616469
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8477-8500
0.014
Not Conserved
7mer
5738-5763
0.005
5
7mer
8105-8129
0.003
0
6mer
916-941
0.003
2
6mer
4447-4468
0.002
3
6mer
3581-3600
0.001
1
6mer
3860-3875
0.001
1
6mer
4786-4809
0.001
1
RP11-161M6.2
hsa-miR-29c-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565139
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-166
0.030
1
RP11-161M6.2
hsa-miR-29c-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563863
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-163
0.027
1
6mer
609-628
0.002
0
RP11-907D1.1
hsa-miR-29c-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557211
Biotype: lincRNA
Gene id: ENSG00000259026
Gene Name: RP11-907D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-504
0.023
Not Conserved
7mer
118-132
0.007
0
XLOC_011533
hsa-miR-29c-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023742
Biotype: transcript isomorph
Gene id: XLOC_011533
Gene Name: XLOC_011533
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-142
0.017
1
7mer
1245-1264
0.010
1
6mer
559-573
0.003
1
AP001172.2
hsa-miR-29c-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000602921
Biotype: lincRNA
Gene id: ENSG00000270071
Gene Name: AP001172.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
438-457
0.030
Not Conserved
LOC90834
hsa-miR-29c-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_026993.1
Biotype: sense
Gene id: NR_026993.1 (gene)
Gene Name: LOC90834
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-182
0.020
0
7mer
2286-2301
0.005
Not Conserved
6mer
2260-2280
0.003
0
6mer
1966-1988
0.002
1
XLOC_007135
hsa-miR-29c-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014559
Biotype: transcript isomorph
Gene id: XLOC_007135
Gene Name: XLOC_007135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
642-661
0.023
1
7mer
708-726
0.006
1
RP13-487P22.1
hsa-miR-29c-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565581
Biotype: sense_intronic
Gene id: ENSG00000261529
Gene Name: RP13-487P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-723
0.030
0
CTD-2143L24.1
hsa-miR-29c-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606222
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-281
0.027
0
6mer
354-375
0.003
1
SOX9-AS1
hsa-miR-29c-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000602213
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
123-141
0.029
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept