LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29c-3p


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Gene
miRNA
Score
DIANA Links
RP1-111D6.3
hsa-miR-29c-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000451095
Biotype: lincRNA
Gene id: ENSG00000228408
Gene Name: RP1-111D6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-619
0.025
0
6mer
708-721
0.006
1
LINC01224
hsa-miR-29c-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1677-1702
0.032
0
LINC00907
hsa-miR-29c-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000593234
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2548-2566
0.030
2
6mer
2561-2578
0.001
1
RP1-69D17.3
hsa-miR-29c-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442449
Biotype: antisense
Gene id: ENSG00000233351
Gene Name: RP1-69D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-354
0.031
9
SLX1B-SULT1A4
hsa-miR-29c-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564950
Biotype: retained_intron
Gene id: ENSG00000260280
Gene Name: SLX1B-SULT1A4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-252
0.031
6
OIP5-AS1
hsa-miR-29c-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5945-5957
0.017
7
6mer
275-288
0.012
8
6mer
608-633
0.003
3
RP11-688I9.4
hsa-miR-29c-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530572
Biotype: lincRNA
Gene id: ENSG00000254938
Gene Name: RP11-688I9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-171
0.031
0
LINC00461
hsa-miR-29c-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505030
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-328
0.031
10
RP11-137H15.3
hsa-miR-29c-3p
0.778
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619996
Biotype: lincRNA
Gene id: ENSG00000274546
Gene Name: RP11-137H15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1001-1011
0.031
1
XLOC_011384
hsa-miR-29c-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023557
Biotype: transcript isomorph
Gene id: XLOC_011384
Gene Name: XLOC_011384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3205-3221
0.017
4
7mer
58-76
0.012
0
7mer
1796-1817
0.002
1
XLOC_001863
hsa-miR-29c-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004025
Biotype: transcript isomorph
Gene id: XLOC_001863
Gene Name: XLOC_001863
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-207
0.031
2
LL0XNC01-7P3.1
hsa-miR-29c-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602455
Biotype: lincRNA
Gene id: ENSG00000270012
Gene Name: LL0XNC01-7P3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-484
0.015
6
6mer
2673-2692
0.011
7
6mer
902-916
0.004
5
6mer
1557-1571
0.002
1
SLX1B-SULT1A4
hsa-miR-29c-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037609.1
Biotype: sense
Gene id: NR_037609.1 (gene)
Gene Name: SLX1B-SULT1A4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-318
0.031
6
RP11-2A4.4
hsa-miR-29c-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4356-4372
0.023
1
8mer
3465-3484
0.008
1
RP11-643G5.6
hsa-miR-29c-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528319
Biotype: lincRNA
Gene id: ENSG00000255429
Gene Name: RP11-643G5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-217
0.031
2
RP11-324F11.1
hsa-miR-29c-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519306
Biotype: lincRNA
Gene id: ENSG00000253432
Gene Name: RP11-324F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
420-440
0.031
0
XLOC_013917
hsa-miR-29c-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029002
Biotype: transcript isomorph
Gene id: XLOC_013917
Gene Name: XLOC_013917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-505
0.031
0
RP11-1007O24.2
hsa-miR-29c-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568345
Biotype: lincRNA
Gene id: ENSG00000261187
Gene Name: RP11-1007O24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-235
0.026
1
6mer
578-599
0.004
5
LINC00879
hsa-miR-29c-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466089
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-295
0.030
1
TUG1
hsa-miR-29c-3p
0.770
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000566220
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-69
0.030
9
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