LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29c-3p


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Gene
miRNA
Score
DIANA Links
XLOC_011256
hsa-miR-29c-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023409
Biotype: transcript isomorph
Gene id: XLOC_011256
Gene Name: XLOC_011256
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
976-999
0.026
1
6mer
904-927
0.004
1
6mer
767-781
0.003
Not Conserved
FGF14-AS1
hsa-miR-29c-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444686
Biotype: antisense
Gene id: ENSG00000234445
Gene Name: FGF14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-284
0.034
1
LINC00969
hsa-miR-29c-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601955
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-319
0.020
2
8mer
292-307
0.013
1
NPPA-AS1
hsa-miR-29c-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037806.1
Biotype: antisense
Gene id: NR_037806.1 (gene)
Gene Name: NPPA-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1430-1443
0.034
5
XLOC_008698
hsa-miR-29c-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018414
Biotype: transcript isomorph
Gene id: XLOC_008698
Gene Name: XLOC_008698
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-641
0.033
1
RP11-571M6.17
hsa-miR-29c-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602802
Biotype: lincRNA
Gene id: ENSG00000270039
Gene Name: RP11-571M6.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
551-571
0.033
2
LINC00648
hsa-miR-29c-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555985
Biotype: lincRNA
Gene id: ENSG00000259129
Gene Name: LINC00648
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1630-1656
0.033
2
RP11-519M16.1
hsa-miR-29c-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500092
Biotype: lincRNA
Gene id: ENSG00000246876
Gene Name: RP11-519M16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1450-1469
0.030
0
6mer
1466-1483
0.003
2
LINC00969
hsa-miR-29c-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451228
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-236
0.018
2
8mer
209-224
0.015
1
LINC00969
hsa-miR-29c-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595382
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-397
0.018
2
8mer
370-385
0.015
1
XLOC_010176
hsa-miR-29c-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020899
Biotype: transcript isomorph
Gene id: XLOC_010176
Gene Name: XLOC_010176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1877-1897
0.020
1
7mer
286-308
0.013
0
AC073254.1
hsa-miR-29c-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595732
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-170
0.018
1
7mer
816-827
0.010
2
7mer
190-205
0.005
Not Conserved
LL22NC03-86G7.1
hsa-miR-29c-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23017-23032
0.009
5
7mer
26989-27011
0.005
1
7mer
5878-5899
0.003
1
6mer
31395-31417
0.002
2
8mer
5916-5935
0.002
0
6mer
34290-34311
0.002
0
6mer
21054-21071
0.001
1
6mer
26373-26388
0.001
1
6mer
18278-18302
0.001
1
7mer
20747-20761
0.001
0
6mer
10139-10152
0.001
1
8mer+mismatch
6513-6531
0.001
1
7mer
9823-9847
0.001
0
6mer
6938-6958
0.001
0
6mer
8265-8281
0.001
Not Conserved
6mer
22531-22548
0.001
0
6mer
3973-3996
0.001
0
RP11-829H16.3
hsa-miR-29c-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555108
Biotype: antisense
Gene id: ENSG00000258525
Gene Name: RP11-829H16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1235-1258
0.033
4
AC067961.1
hsa-miR-29c-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431435
Biotype: lincRNA
Gene id: ENSG00000232784
Gene Name: AC067961.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-469
0.027
9
6mer
207-221
0.006
3
LINC00934
hsa-miR-29c-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024246.2
Biotype: lincRNA
Gene id: NR_024246.2 (gene)
Gene Name: LINC00934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-488
0.027
1
7mer
1192-1209
0.006
1
WISP1-OT1
hsa-miR-29c-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602893
Biotype: sense_intronic
Gene id: ENSG00000270132
Gene Name: WISP1-OT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-615
0.026
6
6mer
328-351
0.006
1
RP11-776A13.1
hsa-miR-29c-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549055
Biotype: lincRNA
Gene id: ENSG00000257262
Gene Name: RP11-776A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-322
0.024
1
6mer
60-77
0.009
2
XLOC_004303
hsa-miR-29c-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009882
Biotype: transcript isomorph
Gene id: XLOC_004303
Gene Name: XLOC_004303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-149
0.030
1
6mer
120-136
0.003
0
LINC00461
hsa-miR-29c-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511014
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-327
0.033
10
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