LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29c-3p


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Gene
miRNA
Score
DIANA Links
CTD-2291D10.3
hsa-miR-29c-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599269
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-163
0.036
0
RP11-74C1.4
hsa-miR-29c-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434112
Biotype: sense_intronic
Gene id: ENSG00000232536
Gene Name: RP11-74C1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-367
0.036
4
CTA-929C8.9
hsa-miR-29c-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10082-10096
0.012
1
8mer
14430-14454
0.011
0
9mer
16275-16292
0.005
1
6mer
356-371
0.003
1
7mer
4054-4073
0.003
1
6mer
8651-8666
0.002
Not Conserved
6mer
6474-6490
0.001
0
EAF1-AS1
hsa-miR-29c-3p
0.820
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595975
Biotype: antisense
Gene id: ENSG00000249786
Gene Name: EAF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-309
0.035
0
LINC00969
hsa-miR-29c-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594976
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-319
0.020
2
8mer
292-307
0.015
1
XLOC_004842
hsa-miR-29c-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009279
Biotype: transcript isomorph
Gene id: XLOC_004842
Gene Name: XLOC_004842
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
385-409
0.035
2
RP11-574O16.1
hsa-miR-29c-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564299
Biotype: lincRNA
Gene id: ENSG00000259855
Gene Name: RP11-574O16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-345
0.035
2
RP13-870H17.3
hsa-miR-29c-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000617529
Biotype: lincRNA
Gene id: ENSG00000254872
Gene Name: RP13-870H17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-136
0.035
1
CASC20
hsa-miR-29c-3p
0.819
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000415932
Biotype: lincRNA
Gene id: ENSG00000229876
Gene Name: CASC20
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-47
0.033
1
6mer
281-298
0.002
Not Conserved
XIST
hsa-miR-29c-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14636-14657
0.007
1
7mer
3708-3734
0.005
2
6mer
18517-18531
0.004
1
7mer
4454-4475
0.004
1
6mer
8346-8362
0.002
4
6mer
13501-13518
0.002
1
6mer
14849-14861
0.002
2
6mer
10970-10982
0.002
3
6mer
11845-11854
0.002
1
6mer
11264-11273
0.002
2
6mer
12727-12736
0.002
2
6mer
13864-13891
0.001
1
6mer
12439-12448
0.001
1
XLOC_001966
hsa-miR-29c-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004118
Biotype: transcript isomorph
Gene id: XLOC_001966
Gene Name: XLOC_001966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
781-805
0.035
1
RP11-735B13.2
hsa-miR-29c-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488348
Biotype: lincRNA
Gene id: ENSG00000242339
Gene Name: RP11-735B13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-227
0.035
1
CTA-342B11.3
hsa-miR-29c-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6241-6260
0.007
1
7mer
4921-4940
0.007
4
8mer
15828-15847
0.006
0
8mer
4394-4414
0.005
0
7mer
23673-23691
0.004
0
8mer
17444-17464
0.003
1
8mer+mismatch
17397-17417
0.003
1
6mer
10970-10987
0.001
0
XLOC_001924
hsa-miR-29c-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005049
Biotype: transcript isomorph
Gene id: XLOC_001924
Gene Name: XLOC_001924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
41-57
0.021
1
6mer
444-463
0.014
1
RP11-65I12.1
hsa-miR-29c-3p
0.818
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000613966
Biotype: antisense
Gene id: ENSG00000274877
Gene Name: RP11-65I12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-413
0.028
3
6mer
3187-3205
0.006
1
6mer
2378-2398
0.002
0
CTD-2311B13.1
hsa-miR-29c-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551565
Biotype: lincRNA
Gene id: ENSG00000257891
Gene Name: CTD-2311B13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
523-541
0.020
Not Conserved
6mer
464-477
0.016
1
LINC00969
hsa-miR-29c-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000593988
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-298
0.018
2
8mer
271-286
0.013
1
6mer
413-428
0.003
1
XLOC_011880
hsa-miR-29c-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024586
Biotype: transcript isomorph
Gene id: XLOC_011880
Gene Name: XLOC_011880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-77
0.035
3
LINC00969
hsa-miR-29c-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420851
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
659-686
0.020
2
8mer
659-674
0.015
1
LINC00969
hsa-miR-29c-3p
0.816
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597662
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-319
0.019
2
8mer
292-307
0.016
1
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