LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-29c-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LINC01002
hsa-miR-29c-3p
0.843
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000622894
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-358
0.026
1
6mer
39-57
0.008
1
6mer
122-141
0.004
0
XLOC_003187
hsa-miR-29c-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007208
Biotype: transcript isomorph
Gene id: XLOC_003187
Gene Name: XLOC_003187
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-226
0.038
0
LINC00969
hsa-miR-29c-3p
0.842
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600382
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-397
0.022
2
8mer
370-385
0.016
1
LINC00969
hsa-miR-29c-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000612098
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-152
0.023
2
8mer
125-140
0.015
1
RP11-168E17.1
hsa-miR-29c-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505386
Biotype: lincRNA
Gene id: ENSG00000251210
Gene Name: RP11-168E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-444
0.038
0
RP4-758J24.5
hsa-miR-29c-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606641
Biotype: lincRNA
Gene id: ENSG00000272091
Gene Name: RP4-758J24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-89
0.038
0
LNX1-AS2
hsa-miR-29c-3p
0.841
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509974
Biotype: sense_intronic
Gene id: ENSG00000248494
Gene Name: LNX1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
294-310
0.038
0
RP4-761J14.8
hsa-miR-29c-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000589924
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-360
0.028
10
6mer
330-343
0.009
11
RP11-710E1.2
hsa-miR-29c-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000609450
Biotype: lincRNA
Gene id: ENSG00000272856
Gene Name: RP11-710E1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
170-194
0.038
4
LINC00969
hsa-miR-29c-3p
0.839
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597982
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-319
0.022
2
8mer
292-307
0.016
1
RPL34-AS1
hsa-miR-29c-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507248
Biotype: lincRNA
Gene id: ENSG00000234492
Gene Name: RPL34-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-170
0.024
2
7mer
3263-3286
0.013
0
XLOC_007700
hsa-miR-29c-3p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015818
Biotype: transcript isomorph
Gene id: XLOC_007700
Gene Name: XLOC_007700
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-279
0.038
3
SOX9-AS1
hsa-miR-29c-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000424417
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
190-209
0.033
1
6mer
530-540
0.004
1
RP11-15K3.1
hsa-miR-29c-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000418379
Biotype: lincRNA
Gene id: ENSG00000236373
Gene Name: RP11-15K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
367-385
0.037
4
RP11-353M9.1
hsa-miR-29c-3p
0.837
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449462
Biotype: antisense
Gene id: ENSG00000234091
Gene Name: RP11-353M9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-314
0.037
2
LINC00969
hsa-miR-29c-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602175
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-237
0.021
2
8mer
210-225
0.016
1
RP11-202D1.2
hsa-miR-29c-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000565170
Biotype: lincRNA
Gene id: ENSG00000260433
Gene Name: RP11-202D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-585
0.037
1
RP11-167B3.1
hsa-miR-29c-3p
0.836
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557499
Biotype: lincRNA
Gene id: ENSG00000259041
Gene Name: RP11-167B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-66
0.037
0
RP11-540O11.8
hsa-miR-29c-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000624853
Biotype: sense_intronic
Gene id: ENSG00000280036
Gene Name: RP11-540O11.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
640-663
0.037
5
LINC01002
hsa-miR-29c-3p
0.835
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620058
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29c-3p
Sequence: uagcaccauuugaaaucgguua
MirBase ID: MIMAT0000681
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-474
0.024
1
6mer
144-162
0.008
1
6mer
227-246
0.005
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept