LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
RP11-523L20.2
hsa-miR-29b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565451
Biotype: lincRNA
Gene id: ENSG00000261231
Gene Name: RP11-523L20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
368-389
0.020
0
6mer
19-35
0.004
0
RP5-944M2.3
hsa-miR-29b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540774
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
865-882
0.011
1
8mer
220-243
0.010
0
6mer
153-178
0.003
0
CTB-176F20.3
hsa-miR-29b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600671
Biotype: antisense
Gene id: ENSG00000267934
Gene Name: CTB-176F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2831-2841
0.009
0
7mer
2314-2335
0.008
0
7mer
1452-1470
0.008
0
FAS-AS1
hsa-miR-29b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_028371.1
Biotype: antisense
Gene id: NR_028371.1 (gene)
Gene Name: FAS-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1056-1074
0.020
2
6mer
35-49
0.005
0
RP11-360K13.1
hsa-miR-29b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527528
Biotype: lincRNA
Gene id: ENSG00000254587
Gene Name: RP11-360K13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
218-232
0.021
2
6mer
1113-1137
0.004
Not Conserved
LINC00051
hsa-miR-29b-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517704
Biotype: antisense
Gene id: ENSG00000254008
Gene Name: LINC00051
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-722
0.020
0
6mer
809-835
0.004
0
XLOC_006950
hsa-miR-29b-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014471
Biotype: transcript isomorph
Gene id: XLOC_006950
Gene Name: XLOC_006950
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
698-722
0.020
0
6mer
809-835
0.004
0
XLOC_013011
hsa-miR-29b-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026953
Biotype: transcript isomorph
Gene id: XLOC_013011
Gene Name: XLOC_013011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
49-73
0.013
0
6mer
118-144
0.012
0
AC079790.2
hsa-miR-29b-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420365
Biotype: antisense
Gene id: ENSG00000225214
Gene Name: AC079790.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-35
0.025
8
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