LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
LL22NC03-22D1.1
hsa-miR-29b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7821-7838
0.011
1
8mer
10229-10246
0.004
0
7mer
14776-14793
0.003
1
6mer
917-932
0.003
1
6mer
13446-13463
0.002
4
6mer
13317-13337
0.001
0
6mer
10788-10809
0.001
2
LINC01251
hsa-miR-29b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000422764
Biotype: antisense
Gene id: ENSG00000233776
Gene Name: LINC01251
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-30
0.025
3
RP11-98C1.2
hsa-miR-29b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591103
Biotype: antisense
Gene id: ENSG00000272895
Gene Name: RP11-98C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-367
0.025
2
LINC00113
hsa-miR-29b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000442550
Biotype: lincRNA
Gene id: ENSG00000225298
Gene Name: LINC00113
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-560
0.025
1
RP11-81H14.2
hsa-miR-29b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542875
Biotype: lincRNA
Gene id: ENSG00000251301
Gene Name: RP11-81H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
516-531
0.017
5
7mer
452-466
0.008
1
RP11-400D2.3
hsa-miR-29b-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503009
Biotype: lincRNA
Gene id: ENSG00000251291
Gene Name: RP11-400D2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
224-242
0.025
1
LINC01251
hsa-miR-29b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444956
Biotype: antisense
Gene id: ENSG00000233776
Gene Name: LINC01251
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-30
0.025
3
LOC646719
hsa-miR-29b-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_046262.1
Biotype: lincRNA
Gene id: NR_046262.1 (gene)
Gene Name: LOC646719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
639-659
0.024
1
6mer
3959-3976
0.001
0
DARS-AS1
hsa-miR-29b-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601196
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-72
0.020
0
6mer
285-299
0.005
2
MIR4458HG
hsa-miR-29b-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606459
Biotype: lincRNA
Gene id: ENSG00000247516
Gene Name: MIR4458HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-670
0.025
Not Conserved
XLOC_002244
hsa-miR-29b-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004364
Biotype: transcript isomorph
Gene id: XLOC_002244
Gene Name: XLOC_002244
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
878-895
0.025
0
LINC01320
hsa-miR-29b-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603129
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
275-287
0.025
2
XLOC_007119
hsa-miR-29b-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015038
Biotype: transcript isomorph
Gene id: XLOC_007119
Gene Name: XLOC_007119
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1455-1475
0.025
1
RP11-634B7.4
hsa-miR-29b-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449298
Biotype: antisense
Gene id: ENSG00000235749
Gene Name: RP11-634B7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-372
0.022
0
6mer
615-636
0.003
0
XLOC_010020
hsa-miR-29b-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020168
Biotype: transcript isomorph
Gene id: XLOC_010020
Gene Name: XLOC_010020
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
37-54
0.025
2
RP11-152L20.3
hsa-miR-29b-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561674
Biotype: antisense
Gene id: ENSG00000260661
Gene Name: RP11-152L20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
995-1014
0.025
5
DARS-AS1
hsa-miR-29b-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601586
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-72
0.020
0
6mer
285-299
0.004
2
DARS-AS1
hsa-miR-29b-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593462
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-72
0.020
0
6mer
285-299
0.005
2
XLOC_003240
hsa-miR-29b-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006650
Biotype: transcript isomorph
Gene id: XLOC_003240
Gene Name: XLOC_003240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8352-8367
0.006
2
8mer
3213-3219
0.005
0
6mer
8421-8446
0.004
4
6mer
8160-8186
0.003
3
7mer
3433-3453
0.003
0
6mer
2369-2390
0.001
0
6mer
5248-5263
0.001
0
6mer
6898-6919
0.001
Not Conserved
XLOC_000914
hsa-miR-29b-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001578
Biotype: transcript isomorph
Gene id: XLOC_000914
Gene Name: XLOC_000914
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-539
0.019
1
7mer
589-612
0.006
0
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