LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
RP11-161M6.2
hsa-miR-29b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568394
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-165
0.023
1
6mer
612-637
0.002
0
6mer
1191-1214
0.001
Not Conserved
XLOC_013188
hsa-miR-29b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026757
Biotype: transcript isomorph
Gene id: XLOC_013188
Gene Name: XLOC_013188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-423
0.026
0
RP3-416J7.5
hsa-miR-29b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000381078
Biotype: lincRNA
Gene id: ENSG00000205653
Gene Name: RP3-416J7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1859-1874
0.025
1
RP11-321L2.2
hsa-miR-29b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000446754
Biotype: lincRNA
Gene id: ENSG00000237414
Gene Name: RP11-321L2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-162
0.025
0
RP4-761J14.8
hsa-miR-29b-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000396799
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1089-1102
0.018
10
6mer
1073-1085
0.008
11
XLOC_003546
hsa-miR-29b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007535
Biotype: transcript isomorph
Gene id: XLOC_003546
Gene Name: XLOC_003546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-141
0.018
1
6mer
2763-2787
0.004
1
7mer
1788-1805
0.004
1
RP11-161M6.2
hsa-miR-29b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565467
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-165
0.023
1
6mer
612-637
0.002
0
6mer
1568-1591
0.000
Not Conserved
AC073254.1
hsa-miR-29b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597495
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-122
0.025
2
RP11-108P20.2
hsa-miR-29b-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586383
Biotype: lincRNA
Gene id: ENSG00000267501
Gene Name: RP11-108P20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-232
0.013
0
8mer
281-295
0.013
1
SNHG14
hsa-miR-29b-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2649-2667
0.010
1
7mer
412-435
0.007
1
6mer
170-187
0.004
1
6mer
1259-1281
0.003
2
6mer
1069-1092
0.001
0
CACNA1C-IT1
hsa-miR-29b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542984
Biotype: sense_intronic
Gene id: ENSG00000256837
Gene Name: CACNA1C-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
415-434
0.025
1
AC058791.1
hsa-miR-29b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_034120.1
Biotype: lincRNA
Gene id: NR_034120.1 (gene)
Gene Name: AC058791.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1734-1753
0.025
1
LINC00663
hsa-miR-29b-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586645
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
445-465
0.019
0
7mer
416-442
0.006
0
RP11-326I11.5
hsa-miR-29b-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605082
Biotype: sense_intronic
Gene id: ENSG00000270426
Gene Name: RP11-326I11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-492
0.025
6
XLOC_003125
hsa-miR-29b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006511
Biotype: transcript isomorph
Gene id: XLOC_003125
Gene Name: XLOC_003125
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-756
0.019
0
6mer
100-127
0.004
0
6mer
382-399
0.002
0
C1orf220
hsa-miR-29b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000521244
Biotype: lincRNA
Gene id: ENSG00000213057
Gene Name: C1orf220
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1581-1601
0.010
1
6mer
78-97
0.006
2
7mer
674-694
0.005
0
7mer
454-468
0.004
0
FLJ46066
hsa-miR-29b-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_040105.1
Biotype: lincRNA
Gene id: NR_040105.1 (gene)
Gene Name: FLJ46066
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1760-1786
0.025
0
FLJ46066
hsa-miR-29b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496220
Biotype: lincRNA
Gene id: ENSG00000241098
Gene Name: FLJ46066
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1760-1786
0.025
0
RP11-116D17.1
hsa-miR-29b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547948
Biotype: lincRNA
Gene id: ENSG00000257726
Gene Name: RP11-116D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-29
0.022
1
6mer
197-218
0.003
0
RP11-804H8.6
hsa-miR-29b-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608605
Biotype: lincRNA
Gene id: ENSG00000273356
Gene Name: RP11-804H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-229
0.021
1
6mer
296-310
0.002
2
6mer
1056-1079
0.001
0
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