LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
RP11-907D1.1
hsa-miR-29b-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557211
Biotype: lincRNA
Gene id: ENSG00000259026
Gene Name: RP11-907D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-505
0.021
Not Conserved
7mer
118-135
0.007
0
AC104113.3
hsa-miR-29b-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000457499
Biotype: antisense
Gene id: ENSG00000233847
Gene Name: AC104113.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-317
0.027
1
KC6
hsa-miR-29b-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000600644
Biotype: lincRNA
Gene id: ENSG00000267313
Gene Name: KC6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1386-1400
0.027
0
LINC01002
hsa-miR-29b-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000423687
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
575-601
0.019
1
6mer
350-371
0.004
0
6mer
267-286
0.004
1
SEPT5-GP1BB
hsa-miR-29b-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037611.1
Biotype: sense
Gene id: NR_037611.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4622-4647
0.015
1
7mer
3906-3925
0.008
6
7mer
4229-4249
0.005
2
XLOC_004381
hsa-miR-29b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009960
Biotype: transcript isomorph
Gene id: XLOC_004381
Gene Name: XLOC_004381
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-320
0.027
0
RP11-219O3.2
hsa-miR-29b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531966
Biotype: antisense
Gene id: ENSG00000255060
Gene Name: RP11-219O3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-186
0.027
2
LINC00113
hsa-miR-29b-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411460
Biotype: lincRNA
Gene id: ENSG00000225298
Gene Name: LINC00113
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-512
0.027
1
GMDS-AS1
hsa-miR-29b-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607519
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-204
0.027
Not Conserved
CSTF3-AS1
hsa-miR-29b-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500025
Biotype: antisense
Gene id: ENSG00000247151
Gene Name: CSTF3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-319
0.027
0
SEPT5-GP1BB
hsa-miR-29b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037612.1
Biotype: sense
Gene id: NR_037612.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3126-3151
0.014
1
7mer
2410-2429
0.008
6
7mer
2733-2753
0.005
2
RP11-480D4.2
hsa-miR-29b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512406
Biotype: lincRNA
Gene id: ENSG00000249159
Gene Name: RP11-480D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-133
0.022
1
8mer+mismatch
129-147
0.005
0
LINC01153
hsa-miR-29b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429809
Biotype: lincRNA
Gene id: ENSG00000227143
Gene Name: LINC01153
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
724-744
0.027
0
CTD-2311B13.1
hsa-miR-29b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551067
Biotype: lincRNA
Gene id: ENSG00000257891
Gene Name: CTD-2311B13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
182-203
0.018
Not Conserved
6mer
121-139
0.008
1
RP4-738P15.1
hsa-miR-29b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000454676
Biotype: lincRNA
Gene id: ENSG00000230725
Gene Name: RP4-738P15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-156
0.011
0
7mer
181-204
0.005
1
7mer
1567-1592
0.005
0
6mer
615-628
0.003
1
6mer
396-414
0.003
0
MAMDC2-AS1
hsa-miR-29b-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448377
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-129
0.022
0
6mer
388-406
0.004
1
RP11-299H22.1
hsa-miR-29b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559985
Biotype: lincRNA
Gene id: ENSG00000259697
Gene Name: RP11-299H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-384
0.027
Not Conserved
SLX1A-SULT1A3
hsa-miR-29b-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037608.1
Biotype: sense
Gene id: NR_037608.1 (gene)
Gene Name: SLX1A-SULT1A3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-318
0.027
7
CTD-2085J24.3
hsa-miR-29b-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590069
Biotype: antisense
Gene id: ENSG00000267555
Gene Name: CTD-2085J24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-197
0.027
1
CTD-2168K21.1
hsa-miR-29b-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522570
Biotype: lincRNA
Gene id: ENSG00000253832
Gene Name: CTD-2168K21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-487
0.024
0
6mer
339-353
0.003
0
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