LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
RP11-1007O24.2
hsa-miR-29b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568345
Biotype: lincRNA
Gene id: ENSG00000261187
Gene Name: RP11-1007O24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-232
0.024
1
6mer
578-601
0.004
5
RP11-353M9.1
hsa-miR-29b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449462
Biotype: antisense
Gene id: ENSG00000234091
Gene Name: RP11-353M9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-314
0.029
2
RP11-264B17.3
hsa-miR-29b-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569969
Biotype: retained_intron
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2623-2650
0.010
9
7mer
181-205
0.006
0
7mer
4395-4406
0.005
5
6mer
5068-5089
0.003
1
6mer
446-459
0.003
3
6mer
1691-1713
0.001
0
CTD-2201E18.3
hsa-miR-29b-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503152
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-418
0.029
1
RP11-415G4.1
hsa-miR-29b-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617598
Biotype: lincRNA
Gene id: ENSG00000274090
Gene Name: RP11-415G4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-394
0.029
0
RP11-930O11.1
hsa-miR-29b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000560924
Biotype: lincRNA
Gene id: ENSG00000259719
Gene Name: RP11-930O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-102
0.026
5
6mer
251-274
0.003
0
LINC00900
hsa-miR-29b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602803
Biotype: lincRNA
Gene id: ENSG00000246100
Gene Name: LINC00900
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-147
0.025
6
6mer
94-109
0.003
0
RP11-575L7.2
hsa-miR-29b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412069
Biotype: antisense
Gene id: ENSG00000226877
Gene Name: RP11-575L7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
216-229
0.028
6
XLOC_000037
hsa-miR-29b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000830
Biotype: transcript isomorph
Gene id: XLOC_000037
Gene Name: XLOC_000037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
906-930
0.024
0
6mer
105-131
0.004
1
RP11-374M1.2
hsa-miR-29b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
633-652
0.028
1
RP11-678G14.3
hsa-miR-29b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596996
Biotype: lincRNA
Gene id: ENSG00000268555
Gene Name: RP11-678G14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-277
0.028
1
AC009961.3
hsa-miR-29b-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607836
Biotype: lincRNA
Gene id: ENSG00000226266
Gene Name: AC009961.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2455-2467
0.019
8
7mer
40-60
0.009
0
GMDS-AS1
hsa-miR-29b-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000534441
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-597
0.028
Not Conserved
C21orf15
hsa-miR-29b-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026755.1
Biotype: lincRNA
Gene id: NR_026755.1 (gene)
Gene Name: C21orf15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
976-998
0.015
0
7mer
66-86
0.014
0
XLOC_011559
hsa-miR-29b-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023765
Biotype: transcript isomorph
Gene id: XLOC_011559
Gene Name: XLOC_011559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-587
0.023
0
7mer
293-309
0.006
Not Conserved
C21orf128
hsa-miR-29b-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000329015
Biotype: sense_overlapping
Gene id: ENSG00000184385
Gene Name: C21orf128
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-590
0.010
0
7mer
1923-1942
0.008
1
8mer
1650-1667
0.007
0
6mer
1281-1303
0.003
4
RP11-65D24.2
hsa-miR-29b-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607406
Biotype: lincRNA
Gene id: ENSG00000204398
Gene Name: RP11-65D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-58
0.022
1
6mer
668-689
0.004
2
6mer
504-521
0.002
0
CTA-292E10.9
hsa-miR-29b-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3158-3184
0.008
7
7mer
4318-4342
0.008
7
7mer
14859-14875
0.006
7
6mer
11074-11094
0.002
5
6mer
15396-15419
0.002
1
6mer
6325-6350
0.001
1
6mer
1072-1096
0.001
0
6mer
20633-20652
0.001
0
CTD-2143L24.1
hsa-miR-29b-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606222
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-289
0.025
0
6mer
354-376
0.003
1
XLOC_011157
hsa-miR-29b-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
146-163
0.014
0
7mer
732-745
0.009
0
7mer
948-968
0.006
0
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