LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
AC006115.3
hsa-miR-29b-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597946
Biotype: antisense
Gene id: ENSG00000269793
Gene Name: AC006115.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-75
0.030
1
RP11-138H8.6
hsa-miR-29b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557800
Biotype: sense_intronic
Gene id: ENSG00000259744
Gene Name: RP11-138H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
683-700
0.029
1
XLOC_010109
hsa-miR-29b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020821
Biotype: transcript isomorph
Gene id: XLOC_010109
Gene Name: XLOC_010109
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-274
0.015
2
8mer
1108-1128
0.015
0
XLOC_012073
hsa-miR-29b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025268
Biotype: transcript isomorph
Gene id: XLOC_012073
Gene Name: XLOC_012073
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-236
0.020
0
8mer
125-148
0.010
0
RP11-219J21.2
hsa-miR-29b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522524
Biotype: lincRNA
Gene id: ENSG00000253342
Gene Name: RP11-219J21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-314
0.029
0
SOX9-AS1
hsa-miR-29b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000602213
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
123-137
0.029
1
FAM95B1
hsa-miR-29b-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000620585
Biotype: retained_intron
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-524
0.018
1
7mer
4151-4171
0.005
Not Conserved
8mer
1770-1790
0.003
Not Conserved
6mer
3248-3266
0.002
Not Conserved
6mer
2020-2037
0.001
0
CTC-546K23.1
hsa-miR-29b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000597452
Biotype: lincRNA
Gene id: ENSG00000229855
Gene Name: CTC-546K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
534-552
0.029
2
RP11-240L7.4
hsa-miR-29b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448857
Biotype: antisense
Gene id: ENSG00000232283
Gene Name: RP11-240L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-536
0.029
1
PAX8-AS1
hsa-miR-29b-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000555766
Biotype: retained_intron
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-474
0.029
3
CTA-941F9.10
hsa-miR-29b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9243-9265
0.010
0
7mer
8563-8588
0.005
1
7mer
20845-20862
0.003
0
6mer
22056-22070
0.003
2
7mer
9315-9336
0.002
2
6mer
11345-11363
0.002
3
6mer
16754-16764
0.001
1
6mer
11484-11499
0.001
2
6mer
5061-5080
0.001
0
6mer
6196-6215
0.001
0
RP11-193M21.1
hsa-miR-29b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602731
Biotype: lincRNA
Gene id: ENSG00000269916
Gene Name: RP11-193M21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
831-855
0.029
1
LINC01090
hsa-miR-29b-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415357
Biotype: lincRNA
Gene id: ENSG00000231689
Gene Name: LINC01090
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-467
0.029
1
AP001172.2
hsa-miR-29b-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000602921
Biotype: lincRNA
Gene id: ENSG00000270071
Gene Name: AP001172.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
438-456
0.029
Not Conserved
RP11-161M6.2
hsa-miR-29b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567961
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-165
0.025
1
6mer
281-306
0.003
0
XLOC_002618
hsa-miR-29b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005993
Biotype: transcript isomorph
Gene id: XLOC_002618
Gene Name: XLOC_002618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
654-677
0.016
0
7mer
428-451
0.013
2
LINC01002
hsa-miR-29b-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616693
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-349
0.024
1
6mer
51-72
0.005
0
TRAF3IP2-AS1
hsa-miR-29b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000531702
Biotype: antisense
Gene id: ENSG00000255389
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
803-829
0.016
1
7mer
366-388
0.013
2
XLOC_012568
hsa-miR-29b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025757
Biotype: transcript isomorph
Gene id: XLOC_012568
Gene Name: XLOC_012568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3387-3407
0.013
1
8mer
516-534
0.009
1
8mer
1760-1782
0.007
1
XLOC_012688
hsa-miR-29b-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026628
Biotype: transcript isomorph
Gene id: XLOC_012688
Gene Name: XLOC_012688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
794-813
0.029
0
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