LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
RP11-324F11.1
hsa-miR-29b-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519306
Biotype: lincRNA
Gene id: ENSG00000253432
Gene Name: RP11-324F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
420-446
0.031
0
XLOC_004212
hsa-miR-29b-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008698
Biotype: transcript isomorph
Gene id: XLOC_004212
Gene Name: XLOC_004212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1081-1100
0.031
0
XLOC_014143
hsa-miR-29b-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029500
Biotype: transcript isomorph
Gene id: XLOC_014143
Gene Name: XLOC_014143
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-71
0.031
2
RP11-2A4.4
hsa-miR-29b-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4358-4372
0.023
1
8mer
3460-3484
0.008
1
TUG1
hsa-miR-29b-3p
0.769
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000566220
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-69
0.030
9
RP11-643G5.6
hsa-miR-29b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528319
Biotype: lincRNA
Gene id: ENSG00000255429
Gene Name: RP11-643G5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
197-218
0.030
2
RP13-60M5.2
hsa-miR-29b-3p
0.768
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000418343
Biotype: lincRNA
Gene id: ENSG00000228189
Gene Name: RP13-60M5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
994-1013
0.030
0
MIAT
hsa-miR-29b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8349-8374
0.014
Not Conserved
7mer
5612-5637
0.005
5
7mer
7982-8003
0.003
0
6mer
802-815
0.003
2
6mer
4331-4342
0.002
3
6mer
3455-3474
0.001
1
6mer
3728-3749
0.001
1
6mer
4661-4683
0.001
1
LOC90834
hsa-miR-29b-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_026993.1
Biotype: sense
Gene id: NR_026993.1 (gene)
Gene Name: LOC90834
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-182
0.020
0
7mer
2286-2300
0.005
Not Conserved
6mer
2260-2285
0.003
0
6mer
1966-1989
0.002
1
XLOC_011256
hsa-miR-29b-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023409
Biotype: transcript isomorph
Gene id: XLOC_011256
Gene Name: XLOC_011256
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
981-999
0.023
1
6mer
910-927
0.004
1
6mer
760-781
0.003
Not Conserved
XLOC_013178
hsa-miR-29b-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027142
Biotype: transcript isomorph
Gene id: XLOC_013178
Gene Name: XLOC_013178
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
626-643
0.030
1
RP11-706O15.1
hsa-miR-29b-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000483854
Biotype: lincRNA
Gene id: ENSG00000205664
Gene Name: RP11-706O15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
509-529
0.030
0
RP11-374M1.2
hsa-miR-29b-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-533
0.030
1
RP13-60M5.2
hsa-miR-29b-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000544644
Biotype: lincRNA
Gene id: ENSG00000228189
Gene Name: RP13-60M5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-451
0.030
0
LINC00113
hsa-miR-29b-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000425376
Biotype: lincRNA
Gene id: ENSG00000225298
Gene Name: LINC00113
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
473-497
0.025
1
6mer
333-352
0.004
0
MIAT
hsa-miR-29b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000613780
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8549-8574
0.014
Not Conserved
7mer
5812-5837
0.004
5
7mer
8182-8203
0.003
0
6mer
876-889
0.003
2
6mer
4531-4542
0.002
3
6mer
3655-3674
0.002
1
6mer
3928-3949
0.001
1
6mer
4861-4883
0.001
1
TMEM75
hsa-miR-29b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_103558.1
Biotype: lincRNA
Gene id: NR_103558.1 (gene)
Gene Name: TMEM75
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
684-704
0.023
0
6mer
26-43
0.007
1
FAM95B1
hsa-miR-29b-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455995
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
498-523
0.018
1
7mer
4150-4170
0.005
Not Conserved
8mer
1769-1789
0.003
Not Conserved
6mer
3247-3265
0.002
Not Conserved
6mer
2019-2036
0.001
0
XLOC_011533
hsa-miR-29b-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023742
Biotype: transcript isomorph
Gene id: XLOC_011533
Gene Name: XLOC_011533
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-143
0.017
1
7mer
1245-1268
0.010
1
6mer
559-578
0.003
1
RP11-327F22.2
hsa-miR-29b-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567728
Biotype: antisense
Gene id: ENSG00000261644
Gene Name: RP11-327F22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
753-780
0.030
1
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