LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
LINC00648
hsa-miR-29b-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555985
Biotype: lincRNA
Gene id: ENSG00000259129
Gene Name: LINC00648
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1630-1654
0.033
2
MPRIP-AS1
hsa-miR-29b-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000428367
Biotype: antisense
Gene id: ENSG00000225442
Gene Name: MPRIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
994-1011
0.023
0
7mer
101-125
0.005
0
6mer
140-166
0.005
1
RP11-94H18.1
hsa-miR-29b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000507496
Biotype: lincRNA
Gene id: ENSG00000248964
Gene Name: RP11-94H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
614-627
0.030
2
6mer
577-593
0.002
0
XLOC_007135
hsa-miR-29b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014559
Biotype: transcript isomorph
Gene id: XLOC_007135
Gene Name: XLOC_007135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
642-661
0.026
1
7mer
708-729
0.006
1
SLX1B-SULT1A4
hsa-miR-29b-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000344620
Biotype: retained_intron
Gene id: ENSG00000260280
Gene Name: SLX1B-SULT1A4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-142
0.033
6
WISP1-OT1
hsa-miR-29b-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602893
Biotype: sense_intronic
Gene id: ENSG00000270132
Gene Name: WISP1-OT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
593-615
0.026
6
6mer
328-351
0.006
1
AC008984.2
hsa-miR-29b-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616950
Biotype: processed_transcript
Gene id: ENSG00000275210
Gene Name: AC008984.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1480-1500
0.032
5
AC073254.1
hsa-miR-29b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604677
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-471
0.032
2
RP1-111D6.3
hsa-miR-29b-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000451095
Biotype: lincRNA
Gene id: ENSG00000228408
Gene Name: RP1-111D6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-619
0.026
0
6mer
702-721
0.006
1
RP11-94H18.1
hsa-miR-29b-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517356
Biotype: lincRNA
Gene id: ENSG00000248964
Gene Name: RP11-94H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
614-627
0.030
2
6mer
577-593
0.002
0
XLOC_000650
hsa-miR-29b-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001363
Biotype: transcript isomorph
Gene id: XLOC_000650
Gene Name: XLOC_000650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
385-402
0.032
0
FGF14-AS1
hsa-miR-29b-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444686
Biotype: antisense
Gene id: ENSG00000234445
Gene Name: FGF14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-284
0.032
1
LL22NC03-86G7.1
hsa-miR-29b-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23013-23032
0.009
5
7mer
26996-27011
0.005
1
7mer
5878-5899
0.003
1
6mer
31406-31417
0.002
2
8mer
5914-5935
0.002
0
6mer
34290-34311
0.002
0
6mer
21059-21071
0.001
1
6mer
26374-26388
0.001
1
7mer
20739-20761
0.001
0
6mer
18277-18302
0.001
1
6mer
10138-10152
0.001
1
7mer
9820-9847
0.001
0
6mer
6938-6958
0.001
0
6mer
8263-8281
0.001
Not Conserved
6mer
22525-22548
0.001
0
6mer
3971-3996
0.001
0
RP11-688I9.4
hsa-miR-29b-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530572
Biotype: lincRNA
Gene id: ENSG00000254938
Gene Name: RP11-688I9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-170
0.032
0
XLOC_006231
hsa-miR-29b-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013576
Biotype: transcript isomorph
Gene id: XLOC_006231
Gene Name: XLOC_006231
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-81
0.032
1
RP11-776A13.1
hsa-miR-29b-3p
0.787
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549055
Biotype: lincRNA
Gene id: ENSG00000257262
Gene Name: RP11-776A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-322
0.024
1
6mer
57-77
0.009
2
LINC01320
hsa-miR-29b-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607437
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
498-510
0.032
2
LINC01224
hsa-miR-29b-3p
0.785
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1677-1701
0.032
0
SOX9-AS1
hsa-miR-29b-3p
0.784
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000412640
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
264-283
0.028
1
6mer
604-615
0.004
1
NPPA-AS1
hsa-miR-29b-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000400892
Biotype: antisense
Gene id: ENSG00000242349
Gene Name: NPPA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
372-397
0.032
5
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