LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-29b-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LINC00969
hsa-miR-29b-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000417704
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
303-326
0.019
2
8mer
288-314
0.014
1
RP13-379L11.1
hsa-miR-29b-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441277
Biotype: lincRNA
Gene id: ENSG00000225708
Gene Name: RP13-379L11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
685-710
0.029
3
6mer
152-175
0.004
1
LINC00969
hsa-miR-29b-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601955
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-319
0.020
2
8mer
281-307
0.013
1
RP11-519M16.1
hsa-miR-29b-3p
0.799
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500092
Biotype: lincRNA
Gene id: ENSG00000246876
Gene Name: RP11-519M16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1450-1474
0.030
0
6mer
1466-1485
0.003
2
XLOC_013917
hsa-miR-29b-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029002
Biotype: transcript isomorph
Gene id: XLOC_013917
Gene Name: XLOC_013917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-505
0.033
0
AC093639.1
hsa-miR-29b-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441026
Biotype: lincRNA
Gene id: ENSG00000234172
Gene Name: AC093639.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-446
0.033
1
XLOC_004303
hsa-miR-29b-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009882
Biotype: transcript isomorph
Gene id: XLOC_004303
Gene Name: XLOC_004303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
134-149
0.030
1
6mer
114-136
0.003
0
CTA-796E4.5
hsa-miR-29b-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21913-21927
0.011
3
6mer
160-182
0.006
2
7mer
10868-10894
0.005
3
6mer
21276-21298
0.003
5
7mer
26307-26325
0.002
0
6mer
8025-8047
0.002
2
6mer
19783-19803
0.001
1
6mer
28225-28250
0.001
0
6mer
27632-27652
0.001
0
RP11-574H6.1
hsa-miR-29b-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000569928
Biotype: lincRNA
Gene id: ENSG00000261036
Gene Name: RP11-574H6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-419
0.033
0
LINC01095
hsa-miR-29b-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515703
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
315-336
0.033
0
LINC00461
hsa-miR-29b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511014
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-338
0.033
10
LINC00969
hsa-miR-29b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451228
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-236
0.018
2
8mer
207-224
0.015
1
LINC00461
hsa-miR-29b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500197
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-339
0.033
10
HTT-AS
hsa-miR-29b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503893
Biotype: antisense
Gene id: ENSG00000251075
Gene Name: HTT-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-181
0.029
1
6mer
43-63
0.004
0
AC073254.1
hsa-miR-29b-3p
0.795
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595732
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-169
0.018
1
7mer
816-835
0.010
2
7mer
190-204
0.005
Not Conserved
RP11-2H8.2
hsa-miR-29b-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552780
Biotype: lincRNA
Gene id: ENSG00000257410
Gene Name: RP11-2H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1137-1162
0.033
2
CTD-3193O13.12
hsa-miR-29b-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000539278
Biotype: antisense
Gene id: ENSG00000214248
Gene Name: CTD-3193O13.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4614-4625
0.029
0
6mer
4219-4236
0.002
3
6mer
1824-1849
0.002
5
AC067961.1
hsa-miR-29b-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431435
Biotype: lincRNA
Gene id: ENSG00000232784
Gene Name: AC067961.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
443-469
0.027
9
6mer
205-221
0.006
3
LINC00969
hsa-miR-29b-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595382
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-397
0.018
2
8mer
368-385
0.014
1
LINC00907
hsa-miR-29b-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000593234
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2548-2566
0.032
2
6mer
2561-2578
0.001
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept