LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29b-3p


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Gene
miRNA
Score
DIANA Links
CTA-342B11.3
hsa-miR-29b-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6239-6260
0.008
1
8mer
17442-17464
0.007
1
7mer
4923-4940
0.007
4
8mer
15829-15847
0.006
0
8mer
4400-4414
0.005
0
7mer
23675-23691
0.004
0
6mer
10967-10987
0.001
0
XLOC_012843
hsa-miR-29b-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026206
Biotype: transcript isomorph
Gene id: XLOC_012843
Gene Name: XLOC_012843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-581
0.037
1
RP11-167B3.1
hsa-miR-29b-3p
0.831
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557499
Biotype: lincRNA
Gene id: ENSG00000259041
Gene Name: RP11-167B3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-66
0.037
0
NPPA-AS1
hsa-miR-29b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037806.1
Biotype: antisense
Gene id: NR_037806.1 (gene)
Gene Name: NPPA-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1418-1443
0.036
5
LINC01002
hsa-miR-29b-3p
0.829
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620058
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-478
0.024
1
6mer
144-163
0.007
1
6mer
227-248
0.005
0
RP11-213G2.2
hsa-miR-29b-3p
0.828
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000456242
Biotype: lincRNA
Gene id: ENSG00000230303
Gene Name: RP11-213G2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-206
0.036
7
XLOC_007700
hsa-miR-29b-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015818
Biotype: transcript isomorph
Gene id: XLOC_007700
Gene Name: XLOC_007700
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-274
0.036
3
LINC00969
hsa-miR-29b-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424730
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-257
0.021
2
8mer
228-245
0.015
1
RP11-12A16.3
hsa-miR-29b-3p
0.827
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437097
Biotype: antisense
Gene id: ENSG00000227068
Gene Name: RP11-12A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-439
0.036
1
CTD-2291D10.3
hsa-miR-29b-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600896
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-172
0.036
0
LINC01015
hsa-miR-29b-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434657
Biotype: antisense
Gene id: ENSG00000224582
Gene Name: LINC01015
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-219
0.036
1
CTD-2311B13.1
hsa-miR-29b-3p
0.826
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551565
Biotype: lincRNA
Gene id: ENSG00000257891
Gene Name: CTD-2311B13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
520-541
0.020
Not Conserved
6mer
452-477
0.016
1
CTA-398F10.1
hsa-miR-29b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519814
Biotype: lincRNA
Gene id: ENSG00000253505
Gene Name: CTA-398F10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
698-723
0.036
3
RP4-665N4.8
hsa-miR-29b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000479395
Biotype: antisense
Gene id: ENSG00000271554
Gene Name: RP4-665N4.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-273
0.036
0
RP11-5N11.2
hsa-miR-29b-3p
0.825
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509750
Biotype: sense_intronic
Gene id: ENSG00000248624
Gene Name: RP11-5N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
40-58
0.036
1
RP4-758J24.5
hsa-miR-29b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606641
Biotype: lincRNA
Gene id: ENSG00000272091
Gene Name: RP4-758J24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-95
0.036
0
XIST
hsa-miR-29b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14636-14656
0.007
1
7mer
3708-3733
0.005
2
6mer
18517-18535
0.004
1
7mer
4454-4471
0.004
1
6mer
8346-8362
0.002
4
6mer
13501-13523
0.002
1
6mer
14849-14861
0.002
2
6mer
10970-10980
0.002
3
6mer
11845-11861
0.002
1
6mer
11264-11280
0.002
2
6mer
12727-12743
0.002
2
6mer
13864-13885
0.001
1
6mer
12439-12455
0.001
1
RPL34-AS1
hsa-miR-29b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507248
Biotype: lincRNA
Gene id: ENSG00000234492
Gene Name: RPL34-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
155-169
0.024
2
7mer
3263-3281
0.012
0
RP13-870H17.3
hsa-miR-29b-3p
0.824
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000617529
Biotype: lincRNA
Gene id: ENSG00000254872
Gene Name: RP13-870H17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-136
0.036
1
RP11-649G15.2
hsa-miR-29b-3p
0.823
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518591
Biotype: antisense
Gene id: ENSG00000253582
Gene Name: RP11-649G15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29b-3p
Sequence: uagcaccauuugaaaucaguguu
MirBase ID: MIMAT0000100
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
311-334
0.036
0
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