LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_013437
hsa-miR-29a-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028093
Biotype: transcript isomorph
Gene id: XLOC_013437
Gene Name: XLOC_013437
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1916-1938
0.025
0
RP4-761J14.8
hsa-miR-29a-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000396799
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1075-1102
0.018
10
6mer
1072-1085
0.007
11
HCG24
hsa-miR-29a-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000414398
Biotype: antisense
Gene id: ENSG00000230313
Gene Name: HCG24
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-46
0.025
1
CTB-176F20.3
hsa-miR-29a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600671
Biotype: antisense
Gene id: ENSG00000267934
Gene Name: CTB-176F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2821-2841
0.010
0
7mer
2313-2335
0.008
0
7mer
1446-1470
0.008
0
RP5-944M2.3
hsa-miR-29a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540774
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
857-882
0.011
1
8mer
220-243
0.011
0
6mer
151-178
0.003
0
XLOC_003125
hsa-miR-29a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006511
Biotype: transcript isomorph
Gene id: XLOC_003125
Gene Name: XLOC_003125
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-754
0.019
0
6mer
100-124
0.004
0
6mer
382-399
0.002
0
XLOC_005730
hsa-miR-29a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011216
Biotype: transcript isomorph
Gene id: XLOC_005730
Gene Name: XLOC_005730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1290-1312
0.018
1
6mer
53-80
0.004
1
6mer
1006-1019
0.003
2
LINC00518
hsa-miR-29a-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000491317
Biotype: lincRNA
Gene id: ENSG00000183674
Gene Name: LINC00518
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-83
0.025
1
RP11-81H14.2
hsa-miR-29a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542875
Biotype: lincRNA
Gene id: ENSG00000251301
Gene Name: RP11-81H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
516-533
0.017
5
7mer
452-463
0.008
1
AC079790.2
hsa-miR-29a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420365
Biotype: antisense
Gene id: ENSG00000225214
Gene Name: AC079790.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
17-35
0.025
8
RP3-513G18.2
hsa-miR-29a-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508619
Biotype: lincRNA
Gene id: ENSG00000250632
Gene Name: RP3-513G18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
528-554
0.020
0
6mer
452-474
0.003
0
6mer
961-982
0.002
Not Conserved
RP1-101G11.3
hsa-miR-29a-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9633-9654
0.012
1
7mer
2412-2428
0.005
0
7mer
9562-9584
0.004
1
6mer
5484-5504
0.002
1
6mer
2050-2072
0.001
1
6mer
6727-6749
0.001
Not Conserved
XLOC_003861
hsa-miR-29a-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007369
Biotype: transcript isomorph
Gene id: XLOC_003861
Gene Name: XLOC_003861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-553
0.020
0
6mer
451-473
0.003
0
6mer
960-981
0.002
Not Conserved
RP11-338C15.3
hsa-miR-29a-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446962
Biotype: lincRNA
Gene id: ENSG00000237980
Gene Name: RP11-338C15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-233
0.025
1
XLOC_002900
hsa-miR-29a-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006294
Biotype: transcript isomorph
Gene id: XLOC_002900
Gene Name: XLOC_002900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1802-1818
0.025
1
LINC00113
hsa-miR-29a-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000411460
Biotype: lincRNA
Gene id: ENSG00000225298
Gene Name: LINC00113
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-512
0.025
1
XLOC_004067
hsa-miR-29a-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008571
Biotype: transcript isomorph
Gene id: XLOC_004067
Gene Name: XLOC_004067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
453-466
0.025
1
LINC00051
hsa-miR-29a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517704
Biotype: antisense
Gene id: ENSG00000254008
Gene Name: LINC00051
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
696-722
0.020
0
6mer
814-835
0.004
0
XLOC_006950
hsa-miR-29a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014471
Biotype: transcript isomorph
Gene id: XLOC_006950
Gene Name: XLOC_006950
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
696-722
0.020
0
6mer
814-835
0.004
0
XLOC_013188
hsa-miR-29a-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026757
Biotype: transcript isomorph
Gene id: XLOC_013188
Gene Name: XLOC_013188
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-422
0.025
0
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