LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
LINC01002
hsa-miR-29a-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000611361
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
752-770
0.018
1
6mer
527-546
0.004
0
6mer
444-462
0.004
1
GMDS-AS1
hsa-miR-29a-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000532564
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-284
0.026
Not Conserved
RP11-387D10.4
hsa-miR-29a-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621212
Biotype: lincRNA
Gene id: ENSG00000278370
Gene Name: RP11-387D10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
316-327
0.013
0
7mer
165-185
0.013
0
RP5-998N21.4
hsa-miR-29a-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415338
Biotype: lincRNA
Gene id: ENSG00000234571
Gene Name: RP5-998N21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-196
0.020
1
6mer
128-141
0.003
1
6mer
1178-1190
0.003
0
RP11-706O15.3
hsa-miR-29a-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000456563
Biotype: lincRNA
Gene id: ENSG00000234449
Gene Name: RP11-706O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
729-750
0.026
Not Conserved
RP11-15B24.4
hsa-miR-29a-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000422010
Biotype: lincRNA
Gene id: ENSG00000232749
Gene Name: RP11-15B24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-571
0.026
3
RP11-79H23.3
hsa-miR-29a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000565297
Biotype: lincRNA
Gene id: ENSG00000261618
Gene Name: RP11-79H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
749-771
0.018
1
8mer
769-791
0.007
Not Conserved
C1orf220
hsa-miR-29a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000521244
Biotype: lincRNA
Gene id: ENSG00000213057
Gene Name: C1orf220
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1582-1601
0.011
1
7mer
676-694
0.006
0
6mer
79-97
0.005
2
7mer
454-468
0.004
0
RP11-508O18.1
hsa-miR-29a-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494761
Biotype: lincRNA
Gene id: ENSG00000239454
Gene Name: RP11-508O18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
933-955
0.026
1
LINC01153
hsa-miR-29a-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429809
Biotype: lincRNA
Gene id: ENSG00000227143
Gene Name: LINC01153
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
737-744
0.026
0
AC005154.6
hsa-miR-29a-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14275-14300
0.010
0
8mer
10632-10647
0.005
1
7mer
10179-10193
0.003
0
7mer
6101-6116
0.003
1
6mer
13353-13375
0.002
1
6mer
11524-11541
0.001
0
6mer
12708-12730
0.001
1
RP11-527H14.1
hsa-miR-29a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583306
Biotype: lincRNA
Gene id: ENSG00000263821
Gene Name: RP11-527H14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-239
0.018
0
6mer
17-31
0.008
1
RP11-680F20.6
hsa-miR-29a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531193
Biotype: antisense
Gene id: ENSG00000254967
Gene Name: RP11-680F20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
728-749
0.026
0
RP11-116D17.1
hsa-miR-29a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547948
Biotype: lincRNA
Gene id: ENSG00000257726
Gene Name: RP11-116D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-29
0.023
1
6mer
197-218
0.003
0
XLOC_012743
hsa-miR-29a-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026394
Biotype: transcript isomorph
Gene id: XLOC_012743
Gene Name: XLOC_012743
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1005-1031
0.016
4
6mer
1137-1149
0.009
7
RP11-108P20.2
hsa-miR-29a-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586383
Biotype: lincRNA
Gene id: ENSG00000267501
Gene Name: RP11-108P20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-232
0.013
0
8mer
281-299
0.013
1
MAMDC2-AS1
hsa-miR-29a-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448377
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-115
0.021
0
6mer
388-409
0.004
1
AC009120.4
hsa-miR-29a-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569389
Biotype: lincRNA
Gene id: ENSG00000261404
Gene Name: AC009120.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
600-621
0.025
0
AC013394.2
hsa-miR-29a-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555227
Biotype: retained_intron
Gene id: ENSG00000272888
Gene Name: AC013394.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-585
0.025
2
CTD-2311B13.1
hsa-miR-29a-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551067
Biotype: lincRNA
Gene id: ENSG00000257891
Gene Name: CTD-2311B13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
185-203
0.018
Not Conserved
6mer
121-139
0.007
1
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