LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
RP11-344E13.3
hsa-miR-29a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580056
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-378
0.027
1
XLOC_013917
hsa-miR-29a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029002
Biotype: transcript isomorph
Gene id: XLOC_013917
Gene Name: XLOC_013917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
488-505
0.027
0
RP11-789F5.1
hsa-miR-29a-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479244
Biotype: lincRNA
Gene id: ENSG00000239767
Gene Name: RP11-789F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
675-690
0.027
Not Conserved
SLX1A-SULT1A3
hsa-miR-29a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037608.1
Biotype: sense
Gene id: NR_037608.1 (gene)
Gene Name: SLX1A-SULT1A3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-318
0.027
7
RP11-161M6.2
hsa-miR-29a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563863
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-163
0.024
1
6mer
609-628
0.002
0
RP11-480D4.2
hsa-miR-29a-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512406
Biotype: lincRNA
Gene id: ENSG00000249159
Gene Name: RP11-480D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-131
0.022
1
8mer+mismatch
129-147
0.005
0
RP11-804H8.6
hsa-miR-29a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608605
Biotype: lincRNA
Gene id: ENSG00000273356
Gene Name: RP11-804H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-229
0.023
1
6mer
291-310
0.002
1
6mer
1059-1079
0.002
0
SEPT5-GP1BB
hsa-miR-29a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037611.1
Biotype: sense
Gene id: NR_037611.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4633-4647
0.014
1
7mer
3911-3925
0.007
6
7mer
4229-4249
0.005
2
RP11-161M6.2
hsa-miR-29a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565139
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-166
0.026
1
LINC01001
hsa-miR-29a-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527683
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
631-646
0.013
0
6mer
126-145
0.009
1
6mer
43-61
0.004
0
RP11-523L20.2
hsa-miR-29a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565451
Biotype: lincRNA
Gene id: ENSG00000261231
Gene Name: RP11-523L20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-389
0.022
0
6mer
17-35
0.004
0
LINC01320
hsa-miR-29a-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000616475
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-299
0.026
2
RP11-193M21.1
hsa-miR-29a-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602731
Biotype: lincRNA
Gene id: ENSG00000269916
Gene Name: RP11-193M21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
842-855
0.026
1
RP4-738P15.1
hsa-miR-29a-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000454676
Biotype: lincRNA
Gene id: ENSG00000230725
Gene Name: RP4-738P15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
138-153
0.011
0
7mer
181-204
0.005
1
7mer
1567-1583
0.005
0
6mer
615-633
0.003
1
6mer
396-414
0.003
0
RP3-323A16.1
hsa-miR-29a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17825-17850
0.006
Not Conserved
7mer
35106-35122
0.004
3
6mer
455-475
0.003
0
7mer
21216-21243
0.002
1
6mer
40874-40893
0.002
1
6mer
12011-12027
0.002
3
6mer
22431-22444
0.002
0
6mer
49416-49433
0.002
2
6mer
30737-30761
0.001
0
6mer
35649-35662
0.001
1
6mer
43695-43721
0.001
0
RP11-392O17.1
hsa-miR-29a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000441790
Biotype: lincRNA
Gene id: ENSG00000228536
Gene Name: RP11-392O17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-146
0.026
2
XLOC_003405
hsa-miR-29a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006771
Biotype: transcript isomorph
Gene id: XLOC_003405
Gene Name: XLOC_003405
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8875-8895
0.013
1
7mer
458-484
0.005
0
8mer
8372-8393
0.004
0
6mer
9341-9364
0.002
0
6mer
8262-8287
0.001
1
6mer
1617-1643
0.001
Not Conserved
6mer
8316-8338
0.001
0
SEPT5-GP1BB
hsa-miR-29a-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037612.1
Biotype: sense
Gene id: NR_037612.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3137-3151
0.014
1
7mer
2415-2429
0.008
6
7mer
2733-2753
0.005
2
RP11-326I11.5
hsa-miR-29a-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000605082
Biotype: sense_intronic
Gene id: ENSG00000270426
Gene Name: RP11-326I11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-492
0.026
6
RP11-161M6.2
hsa-miR-29a-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562570
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-166
0.023
1
6mer
612-631
0.002
0
6mer
1747-1768
0.000
Not Conserved
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