LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
CTD-2143L24.1
hsa-miR-29a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606222
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-281
0.025
0
6mer
354-375
0.003
1
SOX9-AS1
hsa-miR-29a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000602213
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
123-130
0.027
1
AC144833.1
hsa-miR-29a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567953
Biotype: sense_intronic
Gene id: ENSG00000261426
Gene Name: AC144833.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-114
0.027
1
RP11-65D24.2
hsa-miR-29a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607406
Biotype: lincRNA
Gene id: ENSG00000204398
Gene Name: RP11-65D24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-58
0.022
1
6mer
672-689
0.004
2
6mer
505-521
0.002
0
RP4-563E14.1
hsa-miR-29a-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000619319
Biotype: lincRNA
Gene id: ENSG00000273759
Gene Name: RP4-563E14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-138
0.022
1
7mer
515-540
0.005
0
XLOC_002244
hsa-miR-29a-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004364
Biotype: transcript isomorph
Gene id: XLOC_002244
Gene Name: XLOC_002244
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
878-903
0.027
0
AC104113.3
hsa-miR-29a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000457499
Biotype: antisense
Gene id: ENSG00000233847
Gene Name: AC104113.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-317
0.027
1
LINC01000
hsa-miR-29a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-30
0.011
1
8mer
6722-6740
0.011
0
6mer
225-244
0.003
0
6mer
309-327
0.002
0
TAB3-AS1
hsa-miR-29a-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000428263
Biotype: antisense
Gene id: ENSG00000231542
Gene Name: TAB3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-236
0.027
1
RP11-268E23.2
hsa-miR-29a-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609508
Biotype: lincRNA
Gene id: ENSG00000273370
Gene Name: RP11-268E23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-80
0.027
4
DARS-AS1
hsa-miR-29a-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601196
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-72
0.022
0
6mer
285-299
0.005
2
LINC00879
hsa-miR-29a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466560
Biotype: lincRNA
Gene id: ENSG00000239589
Gene Name: LINC00879
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-409
0.027
1
RP11-137H15.3
hsa-miR-29a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619996
Biotype: lincRNA
Gene id: ENSG00000274546
Gene Name: RP11-137H15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1001-1011
0.027
1
RP11-861E21.2
hsa-miR-29a-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589795
Biotype: antisense
Gene id: ENSG00000267199
Gene Name: RP11-861E21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3526-3540
0.023
1
6mer
3841-3861
0.003
4
6mer
2359-2381
0.001
1
DARS-AS1
hsa-miR-29a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601586
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-72
0.022
0
6mer
285-299
0.005
2
DARS-AS1
hsa-miR-29a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593462
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
49-72
0.022
0
6mer
285-299
0.005
2
TTTY15
hsa-miR-29a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000457658
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
191-208
0.027
0
RP11-849F2.4
hsa-miR-29a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585275
Biotype: lincRNA
Gene id: ENSG00000266279
Gene Name: RP11-849F2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
130-144
0.027
3
RP11-219O3.2
hsa-miR-29a-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531966
Biotype: antisense
Gene id: ENSG00000255060
Gene Name: RP11-219O3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-185
0.027
2
XLOC_001401
hsa-miR-29a-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2038-2056
0.027
0
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