LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
RP11-415G4.1
hsa-miR-29a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617598
Biotype: lincRNA
Gene id: ENSG00000274090
Gene Name: RP11-415G4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-394
0.028
0
RP11-374M1.2
hsa-miR-29a-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
638-652
0.028
1
RP11-115H13.1
hsa-miR-29a-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000620503
Biotype: sense_intronic
Gene id: ENSG00000273906
Gene Name: RP11-115H13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
648-670
0.028
0
FLJ46066
hsa-miR-29a-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_040105.1
Biotype: lincRNA
Gene id: NR_040105.1 (gene)
Gene Name: FLJ46066
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1760-1786
0.028
0
FLJ46066
hsa-miR-29a-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496220
Biotype: lincRNA
Gene id: ENSG00000241098
Gene Name: FLJ46066
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1760-1786
0.028
0
RP13-60M5.2
hsa-miR-29a-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000544644
Biotype: lincRNA
Gene id: ENSG00000228189
Gene Name: RP13-60M5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-452
0.028
0
XLOC_013011
hsa-miR-29a-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026953
Biotype: transcript isomorph
Gene id: XLOC_013011
Gene Name: XLOC_013011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
52-73
0.014
0
6mer
125-144
0.013
0
XLOC_002997
hsa-miR-29a-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006381
Biotype: transcript isomorph
Gene id: XLOC_002997
Gene Name: XLOC_002997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-420
0.015
2
8mer
393-408
0.013
1
CTA-941F9.10
hsa-miR-29a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9260-9265
0.008
0
7mer
8562-8588
0.005
1
7mer
20845-20862
0.003
1
6mer
22048-22070
0.002
2
7mer
9322-9336
0.002
2
6mer
11346-11363
0.002
3
6mer
11495-11499
0.001
2
6mer
16749-16764
0.001
1
6mer
6189-6215
0.001
0
6mer
5067-5080
0.001
0
LINC00113
hsa-miR-29a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000425376
Biotype: lincRNA
Gene id: ENSG00000225298
Gene Name: LINC00113
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
477-497
0.023
1
6mer
329-352
0.005
0
RP11-98C1.2
hsa-miR-29a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591103
Biotype: antisense
Gene id: ENSG00000272895
Gene Name: RP11-98C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-367
0.028
2
RP11-770J1.4
hsa-miR-29a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532619
Biotype: lincRNA
Gene id: ENSG00000255384
Gene Name: RP11-770J1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1812-1836
0.024
8
6mer
787-806
0.003
1
RP11-930O11.1
hsa-miR-29a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000560924
Biotype: lincRNA
Gene id: ENSG00000259719
Gene Name: RP11-930O11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-102
0.025
5
6mer
255-274
0.003
0
AC002480.2
hsa-miR-29a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000414116
Biotype: lincRNA
Gene id: ENSG00000238033
Gene Name: AC002480.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2377-2394
0.023
1
6mer
294-313
0.004
1
LINC01002
hsa-miR-29a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000423687
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
575-593
0.019
1
6mer
350-369
0.004
0
6mer
267-285
0.004
1
CTD-2008L17.1
hsa-miR-29a-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588803
Biotype: lincRNA
Gene id: ENSG00000267327
Gene Name: CTD-2008L17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-127
0.028
6
RP11-138H8.6
hsa-miR-29a-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557800
Biotype: sense_intronic
Gene id: ENSG00000259744
Gene Name: RP11-138H8.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
683-708
0.028
1
LINC00663
hsa-miR-29a-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590092
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
28-53
0.028
0
GMDS-AS1
hsa-miR-29a-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607519
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-204
0.027
Not Conserved
XLOC_013178
hsa-miR-29a-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027142
Biotype: transcript isomorph
Gene id: XLOC_013178
Gene Name: XLOC_013178
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
626-643
0.027
1
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