LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_010109
hsa-miR-29a-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020821
Biotype: transcript isomorph
Gene id: XLOC_010109
Gene Name: XLOC_010109
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-272
0.015
2
8mer
1108-1127
0.014
0
RP11-678G14.3
hsa-miR-29a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596996
Biotype: lincRNA
Gene id: ENSG00000268555
Gene Name: RP11-678G14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-275
0.029
1
RP11-907D1.1
hsa-miR-29a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557211
Biotype: lincRNA
Gene id: ENSG00000259026
Gene Name: RP11-907D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
486-504
0.023
Not Conserved
7mer
118-132
0.007
0
NPPA-AS1
hsa-miR-29a-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000400892
Biotype: antisense
Gene id: ENSG00000242349
Gene Name: NPPA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
384-397
0.029
5
LOC90834
hsa-miR-29a-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_026993.1
Biotype: sense
Gene id: NR_026993.1 (gene)
Gene Name: LOC90834
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-182
0.020
0
7mer
2286-2301
0.005
Not Conserved
6mer
2260-2280
0.002
0
6mer
1966-1988
0.002
1
FAM95B1
hsa-miR-29a-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000455995
Biotype: lincRNA
Gene id: ENSG00000223839
Gene Name: FAM95B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
504-523
0.018
1
7mer
4147-4170
0.005
Not Conserved
8mer
1771-1789
0.003
Not Conserved
6mer
3243-3265
0.002
Not Conserved
6mer
2013-2036
0.001
0
TRAF3IP2-AS1
hsa-miR-29a-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000531702
Biotype: antisense
Gene id: ENSG00000255389
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
810-829
0.016
1
7mer
368-388
0.013
2
RP11-575L7.2
hsa-miR-29a-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412069
Biotype: antisense
Gene id: ENSG00000226877
Gene Name: RP11-575L7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-229
0.029
6
LINC01002
hsa-miR-29a-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616693
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-341
0.024
1
6mer
51-70
0.005
0
XLOC_002618
hsa-miR-29a-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005993
Biotype: transcript isomorph
Gene id: XLOC_002618
Gene Name: XLOC_002618
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-677
0.016
0
7mer
434-451
0.013
2
LINC01090
hsa-miR-29a-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000415357
Biotype: lincRNA
Gene id: ENSG00000231689
Gene Name: LINC01090
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-466
0.029
1
XLOC_012568
hsa-miR-29a-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025757
Biotype: transcript isomorph
Gene id: XLOC_012568
Gene Name: XLOC_012568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3387-3409
0.013
1
8mer
516-534
0.009
1
8mer
1760-1781
0.007
1
XLOC_004381
hsa-miR-29a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009960
Biotype: transcript isomorph
Gene id: XLOC_004381
Gene Name: XLOC_004381
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-320
0.029
0
EAF1-AS1
hsa-miR-29a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595975
Biotype: antisense
Gene id: ENSG00000249786
Gene Name: EAF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-309
0.029
0
XLOC_000037
hsa-miR-29a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000830
Biotype: transcript isomorph
Gene id: XLOC_000037
Gene Name: XLOC_000037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
913-930
0.024
0
6mer
108-131
0.005
1
FAM95B1
hsa-miR-29a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000620585
Biotype: retained_intron
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-524
0.017
1
7mer
4148-4171
0.005
Not Conserved
8mer
1772-1790
0.003
Not Conserved
6mer
3244-3266
0.002
Not Conserved
6mer
2014-2037
0.001
0
C21orf128
hsa-miR-29a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000329015
Biotype: sense_overlapping
Gene id: ENSG00000184385
Gene Name: C21orf128
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-590
0.010
0
7mer
1923-1940
0.008
1
8mer
1650-1666
0.008
0
6mer
1281-1303
0.003
4
XLOC_011559
hsa-miR-29a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023765
Biotype: transcript isomorph
Gene id: XLOC_011559
Gene Name: XLOC_011559
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-579
0.023
0
7mer
293-313
0.006
Not Conserved
AC006115.3
hsa-miR-29a-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597946
Biotype: antisense
Gene id: ENSG00000269793
Gene Name: AC006115.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-75
0.029
1
RP11-161M6.2
hsa-miR-29a-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567961
Biotype: lincRNA
Gene id: ENSG00000260807
Gene Name: RP11-161M6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-166
0.026
1
6mer
281-300
0.003
0
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