LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
AC008984.2
hsa-miR-29a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000616950
Biotype: processed_transcript
Gene id: ENSG00000275210
Gene Name: AC008984.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1480-1505
0.031
5
XLOC_011384
hsa-miR-29a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023557
Biotype: transcript isomorph
Gene id: XLOC_011384
Gene Name: XLOC_011384
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3205-3221
0.017
4
7mer
58-76
0.013
0
7mer
1796-1817
0.002
1
XLOC_004212
hsa-miR-29a-3p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008698
Biotype: transcript isomorph
Gene id: XLOC_004212
Gene Name: XLOC_004212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1081-1099
0.031
0
RP11-688I9.4
hsa-miR-29a-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530572
Biotype: lincRNA
Gene id: ENSG00000254938
Gene Name: RP11-688I9.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
154-171
0.031
0
SLX1B-SULT1A4
hsa-miR-29a-3p
0.779
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564950
Biotype: retained_intron
Gene id: ENSG00000260280
Gene Name: SLX1B-SULT1A4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-252
0.031
6
XLOC_001863
hsa-miR-29a-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004025
Biotype: transcript isomorph
Gene id: XLOC_001863
Gene Name: XLOC_001863
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-207
0.031
2
LOC100507346
hsa-miR-29a-3p
0.777
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_038982.1
Biotype: antisense
Gene id: NR_038982.1 (gene)
Gene Name: LOC100507346
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1124-1144
0.024
2
7mer
803-828
0.008
8
LL0XNC01-7P3.1
hsa-miR-29a-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602455
Biotype: lincRNA
Gene id: ENSG00000270012
Gene Name: LL0XNC01-7P3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
466-484
0.015
6
6mer
2673-2692
0.011
7
6mer
902-916
0.004
5
6mer
1557-1571
0.002
1
RP11-324F11.1
hsa-miR-29a-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519306
Biotype: lincRNA
Gene id: ENSG00000253432
Gene Name: RP11-324F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
420-445
0.031
0
XLOC_003187
hsa-miR-29a-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007208
Biotype: transcript isomorph
Gene id: XLOC_003187
Gene Name: XLOC_003187
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-231
0.031
0
RP11-2A4.4
hsa-miR-29a-3p
0.776
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566529
Biotype: lincRNA
Gene id: ENSG00000261146
Gene Name: RP11-2A4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4356-4372
0.023
1
8mer
3465-3484
0.008
1
SLX1B-SULT1A4
hsa-miR-29a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_037609.1
Biotype: sense
Gene id: NR_037609.1 (gene)
Gene Name: SLX1B-SULT1A4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-318
0.031
6
RP11-264B17.3
hsa-miR-29a-3p
0.775
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569969
Biotype: retained_intron
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2631-2650
0.010
9
7mer
184-205
0.006
0
7mer
4385-4406
0.005
5
8mer+mismatch
4204-4223
0.003
2
6mer
5070-5089
0.003
1
6mer
433-459
0.003
3
6mer
1691-1713
0.001
0
RP11-65I12.1
hsa-miR-29a-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000613966
Biotype: antisense
Gene id: ENSG00000274877
Gene Name: RP11-65I12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-413
0.023
3
6mer
3181-3205
0.005
1
6mer
2378-2398
0.002
0
RP11-571M6.17
hsa-miR-29a-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602802
Biotype: lincRNA
Gene id: ENSG00000270039
Gene Name: RP11-571M6.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
551-571
0.031
2
RP1-69D17.3
hsa-miR-29a-3p
0.774
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442449
Biotype: antisense
Gene id: ENSG00000233351
Gene Name: RP1-69D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-354
0.031
9
RP11-240L7.4
hsa-miR-29a-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448857
Biotype: antisense
Gene id: ENSG00000232283
Gene Name: RP11-240L7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
518-536
0.031
1
OIP5-AS1
hsa-miR-29a-3p
0.773
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000500949
Biotype: antisense
Gene id: ENSG00000247556
Gene Name: OIP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5945-5957
0.016
7
6mer
275-288
0.012
8
6mer
608-633
0.003
3
RP11-219J21.2
hsa-miR-29a-3p
0.772
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522524
Biotype: lincRNA
Gene id: ENSG00000253342
Gene Name: RP11-219J21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-314
0.031
0
XLOC_007135
hsa-miR-29a-3p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014559
Biotype: transcript isomorph
Gene id: XLOC_007135
Gene Name: XLOC_007135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
642-661
0.025
1
7mer
708-726
0.006
1
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