LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008698
hsa-miR-29a-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018414
Biotype: transcript isomorph
Gene id: XLOC_008698
Gene Name: XLOC_008698
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-641
0.033
1
LINC01320
hsa-miR-29a-3p
0.792
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000607437
Biotype: lincRNA
Gene id: ENSG00000228262
Gene Name: LINC01320
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
497-510
0.033
2
CTC-546K23.1
hsa-miR-29a-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000597452
Biotype: lincRNA
Gene id: ENSG00000229855
Gene Name: CTC-546K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-552
0.033
2
RP11-706O15.1
hsa-miR-29a-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000483854
Biotype: lincRNA
Gene id: ENSG00000205664
Gene Name: RP11-706O15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
509-530
0.033
0
RP11-202D1.2
hsa-miR-29a-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000565170
Biotype: lincRNA
Gene id: ENSG00000260433
Gene Name: RP11-202D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-585
0.032
1
AC073254.1
hsa-miR-29a-3p
0.791
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604677
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-471
0.032
2
RP11-776A13.1
hsa-miR-29a-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549055
Biotype: lincRNA
Gene id: ENSG00000257262
Gene Name: RP11-776A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-322
0.024
1
6mer
60-77
0.009
2
XLOC_012843
hsa-miR-29a-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026206
Biotype: transcript isomorph
Gene id: XLOC_012843
Gene Name: XLOC_012843
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
564-584
0.032
1
CTA-398F10.1
hsa-miR-29a-3p
0.790
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519814
Biotype: lincRNA
Gene id: ENSG00000253505
Gene Name: CTA-398F10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
698-720
0.032
3
CTC-558O2.1
hsa-miR-29a-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522615
Biotype: antisense
Gene id: ENSG00000254042
Gene Name: CTC-558O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1800-1813
0.029
3
6mer
737-754
0.002
0
6mer
2822-2844
0.001
0
SLX1B-SULT1A4
hsa-miR-29a-3p
0.789
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000344620
Biotype: retained_intron
Gene id: ENSG00000260280
Gene Name: SLX1B-SULT1A4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-142
0.032
6
LINC00461
hsa-miR-29a-3p
0.788
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505030
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-328
0.032
10
AC103563.9
hsa-miR-29a-3p
0.786
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000442200
Biotype: antisense
Gene id: ENSG00000231062
Gene Name: AC103563.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
70-85
0.032
Not Conserved
KC6
hsa-miR-29a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000600644
Biotype: lincRNA
Gene id: ENSG00000267313
Gene Name: KC6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1386-1402
0.032
0
AC093639.1
hsa-miR-29a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441026
Biotype: lincRNA
Gene id: ENSG00000234172
Gene Name: AC093639.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-446
0.032
1
LINC01224
hsa-miR-29a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1677-1702
0.032
0
LINC00862
hsa-miR-29a-3p
0.783
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000367355
Biotype: lincRNA
Gene id: ENSG00000203721
Gene Name: LINC00862
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1376-1397
0.023
2
6mer
1268-1293
0.008
4
RP13-487P22.1
hsa-miR-29a-3p
0.782
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565581
Biotype: sense_intronic
Gene id: ENSG00000261529
Gene Name: RP13-487P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-723
0.032
0
RP11-687F6.5
hsa-miR-29a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000621730
Biotype: lincRNA
Gene id: ENSG00000274776
Gene Name: RP11-687F6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1906-1924
0.027
1
6mer
526-546
0.002
1
6mer
704-730
0.002
0
XLOC_000650
hsa-miR-29a-3p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001363
Biotype: transcript isomorph
Gene id: XLOC_000650
Gene Name: XLOC_000650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
384-402
0.031
0
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