LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-29a-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
LINC00960
hsa-miR-29a-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
482-500
0.034
1
WISP1-OT1
hsa-miR-29a-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602893
Biotype: sense_intronic
Gene id: ENSG00000270132
Gene Name: WISP1-OT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
595-615
0.027
6
6mer
328-351
0.006
1
XLOC_010176
hsa-miR-29a-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020899
Biotype: transcript isomorph
Gene id: XLOC_010176
Gene Name: XLOC_010176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1877-1897
0.021
1
7mer
286-308
0.012
0
LINC00654
hsa-miR-29a-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000379053
Biotype: lincRNA
Gene id: ENSG00000205181
Gene Name: LINC00654
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2460-2480
0.014
1
7mer
5444-5460
0.011
1
6mer
5887-5909
0.004
0
7mer
1636-1658
0.003
1
6mer
4053-4066
0.001
1
CTA-796E4.5
hsa-miR-29a-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21912-21927
0.012
3
6mer
168-182
0.006
2
7mer
10876-10894
0.005
3
6mer
21275-21298
0.003
5
7mer
26307-26325
0.002
0
6mer
8025-8047
0.002
2
6mer
19786-19803
0.001
1
6mer
28225-28250
0.001
0
6mer
27631-27652
0.001
0
NPPA-AS1
hsa-miR-29a-3p
0.802
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037806.1
Biotype: antisense
Gene id: NR_037806.1 (gene)
Gene Name: NPPA-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1430-1443
0.034
5
CTD-2311B13.1
hsa-miR-29a-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551565
Biotype: lincRNA
Gene id: ENSG00000257891
Gene Name: CTD-2311B13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
523-541
0.020
Not Conserved
6mer
452-477
0.014
1
MPRIP-AS1
hsa-miR-29a-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000428367
Biotype: antisense
Gene id: ENSG00000225442
Gene Name: MPRIP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
994-1017
0.024
0
7mer
101-125
0.005
0
6mer
140-156
0.004
1
LINC00461
hsa-miR-29a-3p
0.801
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511014
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-327
0.033
10
LINC00461
hsa-miR-29a-3p
0.800
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500197
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-328
0.033
10
DSCR4-IT1
hsa-miR-29a-3p
0.798
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000417138
Biotype: sense_intronic
Gene id: ENSG00000223608
Gene Name: DSCR4-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-174
0.033
1
CASC20
hsa-miR-29a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000415932
Biotype: lincRNA
Gene id: ENSG00000229876
Gene Name: CASC20
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-47
0.031
1
6mer
281-298
0.002
Not Conserved
AC004988.1
hsa-miR-29a-3p
0.797
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415237
Biotype: antisense
Gene id: ENSG00000203446
Gene Name: AC004988.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
463-485
0.033
3
RP11-829H16.3
hsa-miR-29a-3p
0.796
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555108
Biotype: antisense
Gene id: ENSG00000258525
Gene Name: RP11-829H16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1235-1258
0.033
4
MIR29B1
hsa-miR-29a-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000432045
Biotype: lincRNA
Gene id: ENSG00000226380
Gene Name: MIR29B1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5917-5930
0.023
1
7mer
2583-2607
0.009
1
LL22NC03-86G7.1
hsa-miR-29a-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23017-23032
0.010
5
7mer
26989-27011
0.005
1
7mer
5878-5899
0.003
1
8mer
5916-5935
0.002
0
6mer
31395-31417
0.002
2
6mer
34290-34311
0.001
0
6mer
26366-26388
0.001
1
6mer
21054-21071
0.001
1
6mer
18278-18302
0.001
1
7mer
20739-20761
0.001
0
6mer
10126-10152
0.001
1
8mer+mismatch
6513-6531
0.001
1
7mer
9823-9847
0.001
0
6mer
8262-8281
0.001
Not Conserved
6mer
6938-6958
0.001
0
6mer
22531-22548
0.001
0
6mer
3973-3996
0.001
0
XLOC_006231
hsa-miR-29a-3p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013576
Biotype: transcript isomorph
Gene id: XLOC_006231
Gene Name: XLOC_006231
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-81
0.033
1
XLOC_001924
hsa-miR-29a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005049
Biotype: transcript isomorph
Gene id: XLOC_001924
Gene Name: XLOC_001924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
41-57
0.019
1
6mer
444-463
0.013
1
SOX9-AS1
hsa-miR-29a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000412640
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
264-283
0.028
1
6mer
604-614
0.005
1
AC067961.1
hsa-miR-29a-3p
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431435
Biotype: lincRNA
Gene id: ENSG00000232784
Gene Name: AC067961.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-469
0.027
9
6mer
207-221
0.006
3
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept