LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-29a-3p


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Gene
miRNA
Score
DIANA Links
RP13-379L11.1
hsa-miR-29a-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441277
Biotype: lincRNA
Gene id: ENSG00000225708
Gene Name: RP13-379L11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
685-709
0.030
3
6mer
152-173
0.005
1
NPPA-AS1
hsa-miR-29a-3p
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446542
Biotype: antisense
Gene id: ENSG00000242349
Gene Name: NPPA-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
732-745
0.035
5
LINC00969
hsa-miR-29a-3p
0.814
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451228
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-236
0.019
2
8mer
209-224
0.015
1
XLOC_011880
hsa-miR-29a-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024586
Biotype: transcript isomorph
Gene id: XLOC_011880
Gene Name: XLOC_011880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-77
0.035
3
LINC00969
hsa-miR-29a-3p
0.813
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595382
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-397
0.019
2
8mer
370-385
0.015
1
ENTPD3-AS1
hsa-miR-29a-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000439293
Biotype: antisense
Gene id: ENSG00000223797
Gene Name: ENTPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-40
0.019
1
6mer
320-332
0.006
2
6mer
165-187
0.005
1
6mer
280-301
0.004
1
XLOC_013270
hsa-miR-29a-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027231
Biotype: transcript isomorph
Gene id: XLOC_013270
Gene Name: XLOC_013270
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-115
0.034
1
TUG1
hsa-miR-29a-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000519077
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-51
0.031
9
6mer
4908-4918
0.003
2
RP11-234G16.5
hsa-miR-29a-3p
0.811
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000614150
Biotype: antisense
Gene id: ENSG00000275005
Gene Name: RP11-234G16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-250
0.034
12
LINC01095
hsa-miR-29a-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515703
Biotype: lincRNA
Gene id: ENSG00000248809
Gene Name: LINC01095
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
315-333
0.034
0
AC012146.7
hsa-miR-29a-3p
0.809
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000623522
Biotype: TEC
Gene id: ENSG00000234327
Gene Name: AC012146.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-512
0.023
1
7mer
815-830
0.007
0
6mer
446-466
0.004
1
AC073254.1
hsa-miR-29a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595732
Biotype: antisense
Gene id: ENSG00000237126
Gene Name: AC073254.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-170
0.019
1
7mer
816-835
0.010
2
7mer
190-205
0.005
Not Conserved
TSIX
hsa-miR-29a-3p
0.807
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8909-8923
0.008
0
7mer
14205-14226
0.004
Not Conserved
7mer
26120-26134
0.004
1
6mer
36862-36887
0.004
2
7mer
21365-21387
0.003
2
6mer
33928-33946
0.003
7
6mer
21701-21722
0.001
2
6mer
3693-3705
0.001
0
6mer
9440-9466
0.001
1
6mer
17012-17027
0.001
0
6mer
1883-1906
0.001
Not Conserved
7mer
16343-16357
0.001
0
CTD-3193O13.12
hsa-miR-29a-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000539278
Biotype: antisense
Gene id: ENSG00000214248
Gene Name: CTD-3193O13.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4614-4633
0.030
0
6mer
4219-4230
0.002
3
6mer
1824-1846
0.002
5
RP11-142E9.1
hsa-miR-29a-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000621575
Biotype: sense_intronic
Gene id: ENSG00000276672
Gene Name: RP11-142E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
555-574
0.026
1
6mer
1154-1179
0.004
1
7mer
1228-1245
0.003
0
6mer
2221-2247
0.002
0
RP11-735B13.2
hsa-miR-29a-3p
0.806
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488348
Biotype: lincRNA
Gene id: ENSG00000242339
Gene Name: RP11-735B13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-227
0.034
1
RP11-168E17.1
hsa-miR-29a-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505386
Biotype: lincRNA
Gene id: ENSG00000251210
Gene Name: RP11-168E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-444
0.034
0
LINC00934
hsa-miR-29a-3p
0.805
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024246.2
Biotype: lincRNA
Gene id: NR_024246.2 (gene)
Gene Name: LINC00934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-488
0.028
1
7mer
1192-1215
0.006
1
XLOC_004303
hsa-miR-29a-3p
0.804
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009882
Biotype: transcript isomorph
Gene id: XLOC_004303
Gene Name: XLOC_004303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-149
0.031
1
6mer
120-136
0.003
0
FGF14-AS1
hsa-miR-29a-3p
0.803
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444686
Biotype: antisense
Gene id: ENSG00000234445
Gene Name: FGF14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-29a-3p
Sequence: uagcaccaucugaaaucgguua
MirBase ID: MIMAT0000086
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-284
0.034
1
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