LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
LINC00607
hsa-miR-299-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423530
Biotype: lincRNA
Gene id: ENSG00000235770
Gene Name: LINC00607
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
110-114
0.008
4
6mer
17-21
0.008
1
6mer
350-354
0.006
2
6mer
904-928
0.003
3
RP11-730N24.1
hsa-miR-299-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504339
Biotype: lincRNA
Gene id: ENSG00000248908
Gene Name: RP11-730N24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1940-1945
0.023
5
6mer
1585-1594
0.002
0
RP11-332M2.1
hsa-miR-299-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000366451
Biotype: sense_intronic
Gene id: ENSG00000203644
Gene Name: RP11-332M2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
845-864
0.025
1
XLOC_010940
hsa-miR-299-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022639
Biotype: transcript isomorph
Gene id: XLOC_010940
Gene Name: XLOC_010940
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
598-606
0.025
3
CTB-131K11.1
hsa-miR-299-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582842
Biotype: antisense
Gene id: ENSG00000266469
Gene Name: CTB-131K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-111
0.025
6
CTD-2281M20.1
hsa-miR-299-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506769
Biotype: lincRNA
Gene id: ENSG00000250891
Gene Name: CTD-2281M20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1824-1844
0.011
1
7mer
127-148
0.007
1
6mer
1010-1014
0.004
4
6mer
2372-2395
0.003
1
DCTN1-AS1
hsa-miR-299-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427343
Biotype: antisense
Gene id: ENSG00000237737
Gene Name: DCTN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
563-572
0.012
0
6mer
122-126
0.008
2
6mer
148-170
0.005
2
RP11-120D5.1
hsa-miR-299-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000608176
Biotype: lincRNA
Gene id: ENSG00000234129
Gene Name: RP11-120D5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-729
0.014
Not Conserved
6mer
79-83
0.007
0
7mer
766-791
0.005
1
HOXB-AS3
hsa-miR-299-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000481995
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
508-512
0.014
8
6mer
488-504
0.010
5
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