LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-299-5p


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Gene
miRNA
Score
DIANA Links
LINC00052
hsa-miR-299-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_026869.1
Biotype: lincRNA
Gene id: NR_026869.1 (gene)
Gene Name: LINC00052
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1750-1769
0.016
0
6mer
1630-1645
0.007
2
6mer
958-975
0.003
2
LINC00938
hsa-miR-299-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1699-1724
0.011
1
7mer
6429-6434
0.006
4
6mer
409-418
0.004
1
6mer
5730-5734
0.003
4
6mer
7476-7480
0.002
1
CTC-338M12.4
hsa-miR-299-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505151
Biotype: antisense
Gene id: ENSG00000233937
Gene Name: CTC-338M12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
850-872
0.025
1
RP11-329B9.5
hsa-miR-299-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609524
Biotype: lincRNA
Gene id: ENSG00000272922
Gene Name: RP11-329B9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-391
0.013
0
7mer
357-379
0.012
1
MUC19
hsa-miR-299-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000454784
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24077-24086
0.006
2
7mer
8960-8979
0.004
0
6mer
23894-23911
0.003
5
6mer
3115-3128
0.002
3
6mer
4622-4644
0.002
4
6mer
23758-23776
0.002
1
6mer
6977-6981
0.002
0
6mer
748-770
0.002
1
6mer
6026-6048
0.001
1
6mer
21775-21799
0.001
1
RP11-373J21.1
hsa-miR-299-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503918
Biotype: antisense
Gene id: ENSG00000250877
Gene Name: RP11-373J21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-277
0.025
0
LRP4-AS1
hsa-miR-299-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502049
Biotype: antisense
Gene id: ENSG00000247675
Gene Name: LRP4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1389-1415
0.022
1
6mer
1033-1051
0.003
0
NR2F2-AS1
hsa-miR-299-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000618776
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
407-432
0.025
6
RP11-416I2.1
hsa-miR-299-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562897
Biotype: lincRNA
Gene id: ENSG00000260328
Gene Name: RP11-416I2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26-38
0.025
1
XLOC_014366
hsa-miR-299-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029694
Biotype: transcript isomorph
Gene id: XLOC_014366
Gene Name: XLOC_014366
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
170-175
0.020
1
6mer
82-94
0.005
Not Conserved
RP1-309I22.2
hsa-miR-299-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
191-207
0.005
4
7mer
16930-16949
0.003
1
6mer
17333-17351
0.003
3
6mer
7161-7165
0.002
2
6mer
18392-18396
0.002
2
6mer
8780-8802
0.002
3
6mer
9251-9273
0.002
3
6mer
2029-2047
0.002
3
6mer
26126-26141
0.002
5
6mer
778-787
0.002
1
LINC00669
hsa-miR-299-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_024391.1
Biotype: lincRNA
Gene id: NR_024391.1 (gene)
Gene Name: LINC00669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1457-1474
0.005
6
6mer
224-241
0.005
2
7mer
1098-1111
0.004
2
6mer
1537-1544
0.004
2
6mer
2000-2017
0.004
2
6mer
1807-1816
0.003
2
RP11-140H17.2
hsa-miR-299-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000617574
Biotype: sense_intronic
Gene id: ENSG00000274093
Gene Name: RP11-140H17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-29
0.025
2
ZBED3-AS1
hsa-miR-299-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505918
Biotype: retained_intron
Gene id: ENSG00000250802
Gene Name: ZBED3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
412-428
0.025
1
XLOC_002377
hsa-miR-299-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004484
Biotype: transcript isomorph
Gene id: XLOC_002377
Gene Name: XLOC_002377
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
618-640
0.013
1
7mer
157-171
0.012
1
RP11-21L23.2
hsa-miR-299-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000566747
Biotype: sense_overlapping
Gene id: ENSG00000261578
Gene Name: RP11-21L23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
808-817
0.013
3
7mer
471-491
0.009
0
6mer
1125-1129
0.003
3
GABPB1-AS1
hsa-miR-299-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
590-610
0.010
1
7mer
12003-12023
0.004
0
6mer
7007-7011
0.003
5
6mer
11147-11151
0.002
1
6mer
7280-7297
0.002
1
6mer
6488-6498
0.002
1
6mer
13058-13079
0.001
0
6mer
13546-13564
0.001
1
XLOC_000360
hsa-miR-299-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000052
Biotype: transcript isomorph
Gene id: XLOC_000360
Gene Name: XLOC_000360
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
500-524
0.025
9
RP11-12L8.1
hsa-miR-299-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438885
Biotype: lincRNA
Gene id: ENSG00000228127
Gene Name: RP11-12L8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
500-524
0.025
9
HOXB-AS3
hsa-miR-299-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000465846
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-299-5p
Sequence: ugguuuaccgucccacauacau
MirBase ID: MIMAT0002890
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
419-423
0.014
8
6mer
399-415
0.010
5
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